LINC00938 Gene

Name long intergenic non-protein coding RNA 938
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Several recent studies have underscored the potential clinical relevance of long non‐coding RNAs in human diseases."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In particular, LINC00938 has emerged as a candidate biomarker across distinct pathological contexts. In non‐small cell lung cancer, LINC00938 was found to be among the dysregulated lncRNAs whose altered expression was significantly associated with overall patient survival, suggesting a potential role in tumor progression and prognostication."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In a separate study focused on Parkinson disease, LINC00938 was observed to be up‐regulated in peripheral blood mononuclear cells from patients, and mechanistic experiments demonstrated that it acts as a competing endogenous RNA by directly sponging hsa‐miR‑30c‑5p. This interaction is implicated in regulating the expression of key PD-related genes, such as LRRK2 and ATP13A2, thereby contributing to disease pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Fuduan Peng, Ruiping Wang, Yuanyuan Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differential expression analysis at the individual level reveals a lncRNA prognostic signature for lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12943-017-0666-z"}], "href": "https://doi.org/10.1186/s12943-017-0666-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28587642"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28587642"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mingjie Zhu, Qing Lv, Hu Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a four-long non-coding RNA signature in predicting breast cancer survival."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.11063"}], "href": "https://doi.org/10.3892/ol.2019.11063"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31897133"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31897133"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Wenyong Zhou, Tao Liu, Gaowa Saren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of differentially expressed long non-coding RNAs in non-small cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.10414"}], "href": "https://doi.org/10.3892/ol.2019.10414"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31423174"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31423174"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Maryam Yousefi, Maryam Peymani, Kamran Ghaedi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Significant modulations of linc001128 and linc0938 with miR-24-3p and miR-30c-5p in Parkinson disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-022-06539-3"}], "href": "https://doi.org/10.1038/s41598-022-06539-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35173238"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35173238"}]}]}]}
NCBI Gene ID 400027
API
Download Associations
Predicted Functions View LINC00938's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00938's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00938's ARCHS4 Predicted Functions.

Functional Associations

LINC00938 has 423 functional associations with biological entities spanning 4 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for LINC00938 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00938 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00938 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00938 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00938 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00938 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00938 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00938 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00938 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00938 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00938 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00938 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.