| Name | long intergenic non-protein coding RNA 939 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In a recent comprehensive analysis of Burkitt lymphoma (BL) genomes and transcriptomes"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", multiple layers of genomic deregulation were identified, including MYC oncogene dysregulation mediated by translocations, fusion transcripts, and alternative splicing events. Although the study did not explicitly detail the function of LINC00939, its inclusion among the catalog of perturbed transcripts in BL suggests that this long non‐coding RNA may play a regulatory role. In this context, LINC00939 could contribute to the oncogenic program in BL by modulating transcriptional networks or interacting with other driver genes implicated in MYC dysregulation. Such a role is consistent with the emerging concept that non‐coding RNAs may influence oncogenesis through their involvement in chromatin remodeling, transcriptional regulation, and the stabilization or generation of fusion transcripts. Further functional studies are warranted to clarify the precise mechanisms by which LINC00939 interfaces with the complex interplay of structural, mutational, and transcriptional alterations observed in BL."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Cristina López, Kortine Kleinheinz, Sietse M Aukema, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-019-08578-3"}], "href": "https://doi.org/10.1038/s41467-019-08578-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30926794"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30926794"}]}]}]}
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| NCBI Gene ID | 400084 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00939 has 483 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.
Click the + buttons to view associations for LINC00939 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00939 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00939 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00939 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00939 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00939 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00939 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00939 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00939 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of LINC00939 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |