| Name | long intergenic non-protein coding RNA 940 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies of long noncoding RNAs have revealed their diverse roles in disease pathogenesis. One study on asthma focused on the lncRNA PVT1—which was markedly decreased in corticosteroid‐sensitive nonsevere asthma but increased in corticosteroid‐insensitive severe asthma—and demonstrated that PVT1 regulates airway smooth muscle cell proliferation and cytokine release."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, a separate investigation into glioma prognostics identified LINC00940 as one of five lncRNAs that were significantly differentially expressed between glioma patients with favorable and poor outcomes. LINC00940 was incorporated into a risk assessment model that robustly predicts patient survival, and co‑expression network analysis linked it to genes involved in cytoskeleton organization, cell adhesion, and Janus kinase/signal transducer and activator of transcription (JAK/STAT) signaling pathway processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Thus, while the asthma study highlights the functional importance of lncRNAs in modulating airway smooth muscle cell behavior, the glioma study suggests that LINC00940 may serve as a valuable biomarker and potential regulator in tumor biology and prognosis.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Philip J Austin, Eleni Tsitsiou, Charlotte Boardman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptional profiling identifies the long noncoding RNA plasmacytoma variant translocation (PVT1) as a novel regulator of the asthmatic phenotype in human airway smooth muscle."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Allergy Clin Immunol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jaci.2016.06.014"}], "href": "https://doi.org/10.1016/j.jaci.2016.06.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27484035"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27484035"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Chenggong Hu, Yongfang Zhou, Chang Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Risk assessment model constructed by differentially expressed lncRNAs for the prognosis of glioma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2018.6639"}], "href": "https://doi.org/10.3892/or.2018.6639"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30106138"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30106138"}]}]}]}
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| NCBI Gene ID | 100271702 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00940 has 389 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.
Click the + buttons to view associations for LINC00940 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00940 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00940 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00940 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00940 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00940 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00940 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |