LINC00954 Gene

Name long intergenic non-protein coding RNA 954
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In the study on metabolic adaptations at sexual maturity in laying hens"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", the long intergenic non-coding RNA LINC00954 is highlighted as one of several secreted molecules potentially involved in reproduction. Specifically, LINC00954 is grouped with other proteins such as ZP1, MFGE8, and OVOCH1 that are implicated in processes related to fertilization. Although detailed mechanistic insights remain limited, its inclusion among secreted proteins suggests that LINC00954 may participate in early fertilization events or in the modulation of the reproductive microenvironment during vitellogenesis in hens. This finding opens avenues for further exploration into the role of non-coding RNAs in avian reproductive physiology.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Audrey Gloux, Michel J Duclos, Aurélien Brionne, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrative analysis of transcriptomic data related to the liver of laying hens: from physiological basics to newly identified functions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12864-019-6185-0"}], "href": "https://doi.org/10.1186/s12864-019-6185-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31699050"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31699050"}]}]}]}
NCBI Gene ID 400946
API
Download Associations
Predicted Functions View LINC00954's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00954's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00954's ARCHS4 Predicted Functions.

Functional Associations

LINC00954 has 751 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for LINC00954 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00954 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00954 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00954 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00954 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00954 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00954 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00954 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00954 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00954 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00954 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00954 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.