LINC00960 Gene

Name long intergenic non-protein coding RNA 960
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00960 has emerged as a multifunctional long non‐coding RNA that contributes to tumor progression and other pathological conditions through diverse regulatory mechanisms. In several cancer types—including bladder cancer, osteosarcoma, lung adenocarcinoma, and pancreatic ductal adenocarcinoma—LINC00960 is upregulated and enhances malignant behaviors such as cell viability, proliferation, migration, invasion, clonogenicity, and the epithelial‐mesenchymal transition. In high‐grade bladder cancer, for example, exosome‐derived LINC00960 increases the aggressiveness of recipient cancer cells by upregulating key EMT‐initiating signaling pathways (β‐catenin, Notch, and Smad2/3)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In osteosarcoma, LINC00960 acts as an oncogene by sponging miR‐107 to elevate SALL4 expression and promote tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In lung adenocarcinoma, increased LINC00960 sequesters miR‐124a, thereby modulating the SphK1/S1P signaling axis to foster tumor cell proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similarly, in pancreatic ductal adenocarcinoma, LINC00960 promotes oncogenesis by acting as a competitive endogenous RNA (ceRNA) for miR‐146a‐5p, which results in elevated IRAK1 levels and enhanced cellular aggressiveness."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond its oncogenic roles, LINC00960 forms components of ceRNA networks in other diseases. In the context of schizophrenia, LINC00960 is implicated in a ceRNA axis with miR‐34a‐5p and FOSL1, suggesting a potential role in neurodevelopmental regulatory processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Moreover, in diabetic nephropathy, LINC00960 participates in a ceRNA network influencing MMP‐2 expression by interacting with hsa‐miR‐1237‐3p, thereby linking it to renal injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, LINC00960 has been identified as part of prognostic signatures in bladder urothelial carcinoma and pancreatic ductal adenocarcinoma, underscoring its potential as a diagnostic biomarker and therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Finally, in idiopathic pulmonary fibrosis, LINC00960 is upregulated in lung fibroblasts and functions as a positive regulator of cell proliferation, highlighting its relevance in conditions characterized by tissue remodeling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, the current studies demonstrate that LINC00960 acts as a promoter of disease progression by modulating critical signaling pathways through miRNA sponging and ceRNA network interactions. These findings not only elucidate its pivotal role in enhancing tumor aggressiveness and other pathological responses but also point to LINC00960 as a promising candidate for prognostic and therapeutic applications in multiple clinical settings."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "10"}, {"type": "fg_fs", "start_ref": "3", "end_ref": "7"}, {"type": "fg_f", "ref": "9"}, {"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Cheng-Shuo Huang, Jar-Yi Ho, Jung-Hwa Chiang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA 00960 promoted the aggressiveness of lung adenocarcinoma via the miR-124a/SphK1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1996507"}], "href": "https://doi.org/10.1080/21655979.2021.1996507"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34738865"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34738865"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yaoxing Huang, Qingqing Yan, Danchun Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long intergenic non-protein coding RNA 960 regulates cancer cell viability, migration and invasion through modulating miR-146a-5p/interleukin 1 receptor associated kinase 1 axis in pancreatic ductal adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2020.1868742"}], "href": "https://doi.org/10.1080/21655979.2020.1868742"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33380238"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33380238"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Hani Sabaie, Marziyeh Mazaheri Moghaddam, Madiheh Mazaheri Moghaddam, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA-associated competing endogenous RNA axes in the olfactory epithelium in schizophrenia: a bioinformatics analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-021-04326-0"}], "href": "https://doi.org/10.1038/s41598-021-04326-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34969953"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34969953"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yue Yu, Yuan-Yuan Jia, Meng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PTGER3 and MMP-2 play potential roles in diabetic nephropathy via competing endogenous RNA mechanisms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Nephrol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12882-020-02194-w"}], "href": "https://doi.org/10.1186/s12882-020-02194-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33435900"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33435900"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "XuDong Mao, ShiHan Chen, GongHui Li "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a ten-long noncoding RNA signature for predicting the survival and immune status of patients with bladder urothelial carcinoma based on the GEO database: a superior machine learning model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.202553"}], "href": "https://doi.org/10.18632/aging.202553"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33621953"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33621953"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yingcheng Wu, Jinhuan Wei, Yue Ming, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Orchestrating a biomarker panel with lncRNAs and mRNAs for predicting survival in pancreatic ductal adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.27119"}], "href": "https://doi.org/10.1002/jcb.27119"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29923223"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29923223"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Marina R Hadjicharalambous, Benoit T Roux, Eszter Csomor, et al. 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NCBI Gene ID 401074
API
Download Associations
Predicted Functions View LINC00960's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00960's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00960's ARCHS4 Predicted Functions.

Functional Associations

LINC00960 has 704 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for LINC00960 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00960 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00960 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00960 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00960 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00960 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00960 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00960 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00960 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00960 protein from the LOCATE Predicted Protein Localization Annotations dataset.