LINC00989 Gene

Name long intergenic non-protein coding RNA 989
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNAs (lncRNAs) have emerged as versatile regulators of gene expression and cellular homeostasis, functioning through diverse mechanisms such as modulating chromatin structure, interacting with transcription factors and RNA‐processing machinery, and influencing post‐transcriptional events."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the context of disease, a growing body of evidence implicates lncRNAs in the pathogenesis and progression of complex disorders. For instance, in high myopia—a leading cause of blindness—research has suggested that a lincRNA (LOC100506035) may contribute to disease susceptibility in a gender‐specific manner, underscoring the potential of lncRNAs to modulate the risk of ocular disorders."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n More recently, oncological studies have begun to unravel the prognostic importance of lncRNAs. Among these, LINC00989 was identified as one component of a ten‐lncRNA signature model designed to predict survival outcomes in breast cancer patients. In this study, LINC00989, alongside other lncRNAs, was shown to associate with overall survival, thereby highlighting its promise as a prognostic biomarker and suggesting that it may play a role in tumorigenesis and cancer progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Complementary to these observations, analyses in hepatocellular carcinoma have emphasized the importance of epigenetic regulation—including DNA methylation changes that drive aberrant gene expression—in cancer development. Although LINC00989 was not directly examined in these studies, the regulatory paradigms uncovered reinforce the notion that lncRNAs can have profound impacts on cellular transformation and malignancy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings contribute to an emerging paradigm in which lncRNAs such as LINC00989 act as critical modulators in both normal physiology and disease. Their roles in prognostic prediction and disease susceptibility underscore their potential as novel biomarkers and therapeutic targets in diverse pathological contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}, {"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "4"}, {"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Amanda Salviano-Silva, Sara Cristina Lobo-Alves, Rodrigo Coutinho de Almeida, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Besides Pathology: Long Non-Coding RNA in Cell and Tissue Homeostasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Noncoding RNA (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ncrna4010003"}], "href": "https://doi.org/10.3390/ncrna4010003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29657300"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29657300"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zimeng Ye, Huaichao Luo, Bo Gong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Evaluation of four genetic variants in han chinese subjects with high myopia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Ophthalmol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2015/729463"}], "href": "https://doi.org/10.1155/2015/729463"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25628894"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25628894"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Wenqing Zhou, Yongkui Pang, Yunmin Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Development of a Ten-lncRNA Signature Prognostic Model for Breast Cancer Survival: A Study with the TCGA Database."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Anal Cell Pathol (Amst) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2020/6827057"}], "href": "https://doi.org/10.1155/2020/6827057"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32908814"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32908814"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yu Fang, Lin Xiang, La-Mei Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TNFRSF12A and a new prognostic model identified from methylation combined with expression profiles to predict overall survival in hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Transl Cancer Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.21037/tcr-20-1342"}], "href": "https://doi.org/10.21037/tcr-20-1342"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35117914"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35117914"}]}]}]}
NCBI Gene ID 100506035
API
Download Associations
Predicted Functions View LINC00989's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00989's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00989's ARCHS4 Predicted Functions.

Functional Associations

LINC00989 has 792 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 5 datasets.

Click the + buttons to view associations for LINC00989 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00989 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00989 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00989 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00989 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00989 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.