LINC01004 Gene

Name long intergenic non-protein coding RNA 1004
Description Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies underscore the diverse roles of non‐coding RNAs in human disease. For example, while one investigation into the molecular basis of cognitive impairment in schizophrenia revealed dysregulation of the SMAD pathway in neuronal tissue (from olfactory epithelium)"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", another study focusing on pituitary adenoma uncovered a specific function for the long intergenic non‐protein coding RNA LINC01004. In pituitary adenoma cells, LINC01004 was found to be aberrantly up‐regulated, and functional assays demonstrated that its increased expression promoted malignant behaviors in vitro as well as tumor growth in vivo. Mechanistic analyses provided evidence that LINC01004 acts as a molecular sponge for miR‑323a‑3p and miR‑136‑5p, thereby enhancing the expression of RCN2 and contributing to the oncogenic process."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Although other contexts of neural dysfunction, such as those explored in the schizophrenia study (and in related reports"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", did not address LINC01004 directly, the demonstration of its regulatory role in pituitary adenoma emphasizes the broad relevance of non‐coding RNAs in disease pathogenesis and highlights LINC01004 as a potential target for therapeutic intervention in oncological settings.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Y Horiuchi, M A Kondo, K Okada, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular signatures associated with cognitive deficits in schizophrenia: a study of biopsied olfactory neural epithelium."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Transl Psychiatry (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/tp.2016.154"}], "href": "https://doi.org/10.1038/tp.2016.154"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27727244"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27727244"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Peng Qiu, Jiancheng Bi, Jia Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC01004 promotes malignant behaviors of pituitary adenoma via miR-323a-3p/136-5p/RCN2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Res Pract (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.prp.2022.153884"}], "href": "https://doi.org/10.1016/j.prp.2022.153884"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35490653"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35490653"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mei Chen, Zhenyu Nie, Yan Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A New Ferroptosis-Related lncRNA Signature Predicts the Prognosis of Bladder Cancer Patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Cell Dev Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fcell.2021.699804"}], "href": "https://doi.org/10.3389/fcell.2021.699804"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34869304"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34869304"}]}]}]}
NCBI Gene ID 100216546
API
Download Associations
Predicted Functions View LINC01004's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01004's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01004's ARCHS4 Predicted Functions.

Functional Associations

LINC01004 has 249 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for LINC01004 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01004 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01004 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC01004 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01004 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC01004 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.