LINC01016 Gene

Name long intergenic non-protein coding RNA 1016
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have revealed that the long non‐coding RNA LINC01016 functions as a multifaceted regulator in hormone‐related cancers. In estrogen receptor–positive luminal breast cancer, LINC01016 has been identified as a direct transcriptional target of ERα and is implicated in modulating estrogen signaling, cell proliferation, and autophagy‐related pathways – thereby serving as a promising prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In endometrial cancer, LINC01016 is significantly upregulated and exerts oncogenic effects by acting as a competing endogenous RNA; it sequesters miR‑302a‑3p and miR‑3130‑3p to relieve suppression of NFYA, which in turn upregulates SATB1 and promotes malignant cellular behaviors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Detailed molecular characterization of LINC01016 further suggests that isoform variability and resultant conformational changes may influence its functional roles in cancer pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Moreover, altered expression of LINC01016 has been found to correlate with lymph node metastasis in thyroid carcinoma, indicating its potential involvement in tumor dissemination beyond breast and endometrial malignancies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Collectively, these findings underscore the emerging importance of LINC01016 as a critical mediator of hormone-driven oncogenic processes and as a potential target for diagnostic and therapeutic strategies across multiple cancer types.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Philip Jonsson, Cristian Coarfa, Fahmi Mesmar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Endocrinol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/me.2015-1153"}], "href": "https://doi.org/10.1210/me.2015-1153"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26426411"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26426411"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiaoying Li, Feng Jin, Yang Li "}, {"type": "b", "children": [{"type": "t", "text": "A novel autophagy-related lncRNA prognostic risk model for breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.15980"}], "href": "https://doi.org/10.1111/jcmm.15980"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33216456"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33216456"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xin Pan, Da Li, Jianing Huo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC01016 promotes the malignant phenotype of endometrial cancer cells by regulating the miR-302a-3p/miR-3130-3p/NFYA/SATB1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-018-0291-9"}], "href": "https://doi.org/10.1038/s41419-018-0291-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29467441"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29467441"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Enrique I Ramos, Barbara Yang, Yasmin M Vasquez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of the Testis-specific "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "LINC01016"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " Gene Reveals Isoform-specific Roles in Controlling Biological Processes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Endocr Soc (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/jendso/bvab153"}], "href": "https://doi.org/10.1210/jendso/bvab153"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34703959"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34703959"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yun Zhang, Taobo Jin, Haipeng Shen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Long Non-Coding RNA Expression Profiles and Co-Expression Genes in Thyroid Carcinoma Based on The Cancer Genome Atlas (TCGA) Database."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Sci Monit (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12659/MSM.917845"}], "href": "https://doi.org/10.12659/MSM.917845"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31856144"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31856144"}]}]}]}
NCBI Gene ID 100507584
API
Download Associations
Predicted Functions View LINC01016's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01016's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01016's ARCHS4 Predicted Functions.

Functional Associations

LINC01016 has 153 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 3 datasets.

Click the + buttons to view associations for LINC01016 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01016 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01016 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01016 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.