| Name | long intergenic non-protein coding RNA 1061 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC01061, a long non‐coding RNA, is emerging as a multifaceted regulator in several pathological contexts, including various cancers and viral infections. In cholangiocarcinoma, LINC01061 is upregulated and primarily located in the cytoplasm where it functions as a competing endogenous RNA; by sponging miR‑612 it upregulates SEMA4D expression, thereby promoting cell proliferation, migration, and inhibiting apoptosis, which underlines its potential as a therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the context of virus-induced oncogenesis, such as that driven by Kaposi’s sarcoma–associated herpesvirus, LINC01061 (also known as KIKAT) interacts with the histone demethylase KDM4A to mediate its displacement from the transcription start site of the AMOT promoter. This repositioning enhances AMOT transactivation and promotes endothelial cell migration, suggesting an epigenetic mechanism that may contribute to KDM4A-driven oncogenicity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, studies in papillary thyroid cancer have revealed that LINC01061 is genomically amplified, leading to elevated expression levels that correlate with aggressive clinical characteristics. Mechanistically, LINC01061 acts as a sponge for miR‑4316, which in turn promotes the expression of E2F6, facilitating cell cycle progression, proliferation, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Complementary evidence in gastric cancer further supports an oncogenic role for LINC01061, where its overexpression is associated with enhanced cell growth, altered cell cycle regulation, epithelial–mesenchymal transition (EMT) with concomitant β‑catenin modulation, and poorer patient survival. This correlation underscores its potential utility as a novel diagnostic and prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, a genetic association study has identified a single nucleotide polymorphism located between the FABP2 and LINC01061 genes that is linked to a predisposition to severe forms of tick‑borne encephalitis, suggesting that regulatory elements related to LINC01061 could influence host susceptibility to this viral infection."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Finally, a broader review of cholangiopathies highlights the significance of long non‑coding RNAs—including LINC01061—in modulating gene expression and disease progression, thereby representing attractive targets for novel therapeutic interventions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Aijun Yu, Luwen Zhao, Qingmin Kang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC01061 sponges miR-612 to regulate the oncogenic role of SEMA4D in cholangiocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2019.03.125"}], "href": "https://doi.org/10.1016/j.bbrc.2019.03.125"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30967271"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30967271"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Wan-Shan Yang, Wayne W Yeh, Mel Campbell, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA KIKAT/LINC01061 as a novel epigenetic regulator that relocates KDM4A on chromatin and modulates viral reactivation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Pathog (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.ppat.1009670"}], "href": "https://doi.org/10.1371/journal.ppat.1009670"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34111227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34111227"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xinhua Wu, Yan Yan, Hang Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA copy number gain-mediated lncRNA LINC01061 upregulation predicts poor prognosis and promotes papillary thyroid cancer progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2018.07.032"}], "href": "https://doi.org/10.1016/j.bbrc.2018.07.032"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30029886"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30029886"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Wei Liang, Bin Xia, Meina Yan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Enhanced LINC01061 Levels as a Serum Biomarker in Gastric Cancer and Promotion of Malignant Transformation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Res Treat (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000508310"}], "href": "https://doi.org/10.1159/000508310"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33910210"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33910210"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "A V Barkhash, I V Kozlova, L L Pozdnyakova, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[New Genetic Marker of Human Predisposition to Severe Forms of Tick-Borne Encephalitis]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol (Mosk) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1134/S0026898419020034"}], "href": "https://doi.org/10.1134/S0026898419020034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31184603"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31184603"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Keisaku Sato, Shannon Glaser, Heather Francis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Concise Review: Functional Roles and Therapeutic Potentials of Long Non-coding RNAs in Cholangiopathies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Med (Lausanne) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fmed.2020.00048"}], "href": "https://doi.org/10.3389/fmed.2020.00048"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32154257"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32154257"}]}]}]}
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| NCBI Gene ID | 401149 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC01061 has 390 functional associations with biological entities spanning 2 categories (functional term, phrase or reference, cell line, cell type or tissue) extracted from 6 datasets.
Click the + buttons to view associations for LINC01061 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC01061 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC01061 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC01061 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC01061 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC01061 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC01061 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |