| Name | long intergenic non-protein coding RNA 1091 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In prostate cancer, LINC01091 appears to be implicated as an epigenetic indicator whose differential methylation status distinguishes tumor tissue from normal tissue. Analysis of genome‐wide DNA methylation patterns involving hundreds of thousands of CpG sites demonstrated that, among a panel of five informative CpG loci, alterations at the LINC01091 locus contributed to a highly accurate mathematical model for prostate cancer diagnosis. Although the precise molecular function of LINC01091 remains to be fully characterized, its inclusion among the key methylation markers suggests that it may play a role in the regulatory networks underlying aberrant gene expression associated with prostate tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jason B Nikas, Emily G Nikas "}, {"type": "b", "children": [{"type": "t", "text": "Genome-Wide DNA Methylation Model for the Diagnosis of Prostate Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "ACS Omega (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/acsomega.9b01613"}], "href": "https://doi.org/10.1021/acsomega.9b01613"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31552329"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31552329"}]}]}]}
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| NCBI Gene ID | 285419 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC01091 has 158 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.
Click the + buttons to view associations for LINC01091 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC01091 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC01091 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC01091 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of LINC01091 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC01091 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |