LINC01115 Gene

Name long intergenic non-protein coding RNA 1115
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC01115 is a long non‐coding RNA that remains largely uncharacterized but has emerged from epigenetic studies as a potential player in the pathogenesis of schizophrenia. In a genome‐wide survey of chromatin modifications in prefrontal cortical neurons from schizophrenic patients, LINC01115 was identified among several non‐coding RNA genes showing disease‐specific alterations in histone H3-K4 trimethylation marks, suggesting that its dysregulated expression or chromatin state may contribute to pathogenic gene regulatory networks in the brain."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although the exact function of LINC01115 in neuronal biology has yet to be elucidated, its implication in a brain region critical for cognitive function and its association with epigenetic disturbances support a role in modulating neuronal gene expression, possibly impacting pathways such as oxidative stress and cell motility that have been linked to schizophrenia. In contrast, other studies investigating genetic interactions in obesity"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "and epigenetic influences on body composition"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "did not report on LINC01115, underscoring that its relevance may be more specific to neuropsychiatric rather than metabolic disorders.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Fedor E Gusev, Denis A Reshetov, Amanda C Mitchell, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Transl Psychiatry (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41398-019-0596-1"}], "href": "https://doi.org/10.1038/s41398-019-0596-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31624234"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31624234"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rishika De, Ting Hu, Jason H Moore, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BioData Min (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13040-015-0077-x"}], "href": "https://doi.org/10.1186/s13040-015-0077-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26715945"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26715945"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Peter Rzehak, Marcela Covic, Richard Saffery, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA-Methylation and Body Composition in Preschool Children: Epigenome-Wide-Analysis in the European Childhood Obesity Project (CHOP)-Study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-017-13099-4"}], "href": "https://doi.org/10.1038/s41598-017-13099-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29084944"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29084944"}]}]}]}
NCBI Gene ID 339822
API
Download Associations
Predicted Functions View LINC01115's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01115's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01115's ARCHS4 Predicted Functions.

Functional Associations

LINC01115 has 152 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 2 datasets.

Click the + buttons to view associations for LINC01115 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01115 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01115 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.