LINC01136 Gene

Name long intergenic non-protein coding RNA 1136
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Telomere biology plays a broad role in regulating gene expression beyond telomere‐specific functions, as highlighted by studies showing telomere length–dependent modulation of distal promoters by shelterin components."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the context of hepatocellular carcinoma (HCC), the long intergenic non‐coding RNA (lncRNA) LINC01136 has emerged as a component of prognostic lncRNA signatures. In one study, LINC01136 was integrated with other lncRNAs into an 11‐lncRNA signature that, through a competitive endogenous RNA network involving miRNAs (e.g., miR-195, miR-199b, miR-326, miR-424, and let-7c) and the upregulated oncogene E2F2, was associated with poor patient prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In another investigation focusing on hepatitis B virus–related HCC, LINC01136 was one of eight lncRNAs used to construct a risk score model that robustly differentiated overall survival, with evidence indicating that it coexpresses with the gene SFN as part of cell cycle–related regulatory networks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings suggest that LINC01136 may function as a key regulatory node in HCC by participating in ceRNA-mediated interactions and gene coexpression mechanisms that influence cell cycle and oncogenic pathways. Moreover, its consistent association with patient outcomes underscores its potential utility as both a prognostic biomarker and a therapeutic target in HCC.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ananda Kishore Mukherjee, Shalu Sharma, Suman Sengupta, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Telomere length-dependent transcription and epigenetic modifications in promoters remote from telomere ends."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1007782"}], "href": "https://doi.org/10.1371/journal.pgen.1007782"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30439955"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30439955"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Anmei Wang, Junhua Lei "}, {"type": "b", "children": [{"type": "t", "text": "Identification of an 11-lncRNA signature with high performance for predicting the prognosis of hepatocellular carcinoma using bioinformatics analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Medicine (Baltimore) (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/MD.0000000000023749"}], "href": "https://doi.org/10.1097/MD.0000000000023749"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33592832"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33592832"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiaonan Zhao, Zhenzi Bai, Chenghua Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a Novel Eight-lncRNA Prognostic Signature for HBV-HCC and Analysis of Their Functions Based on Coexpression and ceRNA Networks."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2020/8765461"}], "href": "https://doi.org/10.1155/2020/8765461"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32382578"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32382578"}]}]}]}
NCBI Gene ID 730227
API
Download Associations
Predicted Functions View LINC01136's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01136's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01136's ARCHS4 Predicted Functions.

Functional Associations

LINC01136 has 155 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 4 datasets.

Click the + buttons to view associations for LINC01136 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01136 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01136 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC01136 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01136 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.