LINC01164 Gene

Name long intergenic non-protein coding RNA 1164
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC01164 appears to play a multifaceted role in human disease through its epigenetic regulation. In studies of nasal epithelial DNA methylation in children and adolescents exposed to violence and chronic stress, differential methylation of LINC01164 was identified as one of several CpG markers associated with environmental exposures such as maternal perceived stress and gun violence, potentially linking these exposures to the development of atopic asthma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In addition, while analyses of stress‐related epigenomic changes in similar populations support the overall concept that environmental stressors may predispose to asthma via epigenetic mechanisms"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", separate investigations in hepatocellular carcinoma have highlighted LINC01164 as one of four methylation-regulated long non-coding RNAs whose expression levels serve as robust prognostic biomarkers. In these cancer studies, LINC01164 contributed to a risk scoring system that outperformed traditional staging methods and aided in predicting overall survival, underscoring its potential utility in individualized treatment strategies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qi Yan, Erick Forno, Andres Cardenas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exposure to violence, chronic stress, nasal DNA methylation, and atopic asthma in children."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pediatr Pulmonol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ppul.25372"}], "href": "https://doi.org/10.1002/ppul.25372"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33751861"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33751861"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Qi Yan, Erick Forno, Andres Cardenas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exposure to violence, chronic stress, nasal DNA methylation, and atopic asthma in children."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "medRxiv (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/2020.11.03.20225250"}], "href": "https://doi.org/10.1101/2020.11.03.20225250"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33173928"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33173928"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Le-En Liao, Dan-Dan Hu, Yun Zheng "}, {"type": "b", "children": [{"type": "t", "text": "A Four-Methylated lncRNAs-Based Prognostic Signature for Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes (Basel) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/genes11080908"}], "href": "https://doi.org/10.3390/genes11080908"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32784402"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32784402"}]}]}]}
NCBI Gene ID 399827
API
Download Associations
Predicted Functions View LINC01164's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01164's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01164's ARCHS4 Predicted Functions.

Functional Associations

LINC01164 has 254 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 4 datasets.

Click the + buttons to view associations for LINC01164 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC01164 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01164 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of LINC01164 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01164 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.