LINC01187 Gene

Name long intergenic non-protein coding RNA 1187
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC01187 is a long non‐coding RNA whose expression pattern distinguishes specific renal cell carcinoma (RCC) subtypes. Global lncRNA profiling in RCC patient tissues demonstrated that LINC01187 is among a set of down‐regulated lncRNAs in tumor versus non-tumor tissues, supporting its potential as a biomarker for renal tumor biology monitoring."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, integrative transcriptomic analyses identified LINC01187 as a lineage-specific signature gene for chromophobe renal cell carcinoma (ChRCC); its robust and homogeneous expression was demonstrated in both primary and metastatic classic ChRCC, whereas other RCC subtypes consistently lacked unequivocal expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, in normal kidney tissue, LINC01187 is localized to the distal nephron, specifically within intercalated cells, underscoring its value as an indicator of the cell-of-origin for these tumors. Collectively, these findings indicate that while LINC01187 may be downregulated in some RCC types, its selective and consistent expression in ChRCC establishes it as a promising diagnostic and potentially prognostic biomarker that reflects the underlying lineage and biology of renal tumors.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Julia Bohosova, Marek Kasik, Adela Kubickova, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA PVT1 is increased in renal cell carcinoma and affects viability and migration in vitro."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Lab Anal (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcla.24442"}], "href": "https://doi.org/10.1002/jcla.24442"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35441392"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35441392"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Stephanie L Skala, Xiaoming Wang, Yuping Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Next-generation RNA Sequencing-based Biomarker Characterization of Chromophobe Renal Cell Carcinoma and Related Oncocytic Neoplasms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Urol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.eururo.2020.03.003"}], "href": "https://doi.org/10.1016/j.eururo.2020.03.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32299640"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32299640"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Reza Alaghehbandan, Christopher G Przybycin, Virginie Verkarre, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Chromophobe renal cell carcinoma: Novel molecular insights and clinicopathologic updates."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Asian J Urol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajur.2021.11.010"}], "href": "https://doi.org/10.1016/j.ajur.2021.11.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35198391"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35198391"}]}]}]}
Synonyms CTB-27N1.1, KIDR
NCBI Gene ID 100507267
API
Download Associations
Predicted Functions View LINC01187's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01187's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01187's ARCHS4 Predicted Functions.

Functional Associations

LINC01187 has 115 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for LINC01187 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CellMarker Gene-Cell Type Associations cell types associated with LINC01187 gene from the CellMarker Gene-Cell Type Associations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01187 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC01187 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC01187 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with LINC01187 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01187 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.