LINC01197 Gene

Name long intergenic non-protein coding RNA 1197
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC01197 has emerged as a multifunctional long non‐coding RNA with important tumor‐suppressive and anti‐inflammatory roles in different disease settings. In pancreatic ductal adenocarcinoma, LINC01197 is significantly downregulated in malignant tissues and its low expression is associated with poor prognosis. Functionally, LINC01197 is predominantly localized in the nucleus where it directly binds to β‐catenin, thereby disrupting the interaction between β‐catenin and TCF4 and ultimately inhibiting the Wnt/β‐catenin signaling pathway. This suppression of proliferative signaling contributes to reduced cell growth both in vitro and in vivo."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Moreover, in rheumatoid arthritis, LINC01197 expression is diminished in synovial tissues; its overexpression alleviates disease severity by sponging miR-150, which in turn upregulates THBS2 expression and inactivates the TLR4/NF-κB pathway, leading to reduced inflammation, lower proliferation, and enhanced apoptosis of fibroblast-like synoviocytes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Additionally, LINC01197 has been identified as part of a six-ferroptosis-related lncRNA signature in gastric cancer that can stratify patients into distinct risk groups, thereby serving as a prognostic indicator."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jing Ling, Fan Wang, Chuan Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FOXO1-regulated lncRNA LINC01197 inhibits pancreatic adenocarcinoma cell proliferation by restraining Wnt/β-catenin signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-019-1174-3"}], "href": "https://doi.org/10.1186/s13046-019-1174-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31027497"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31027497"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Y-H Jia, W-W Zheng, Z-H Ye "}, {"type": "b", "children": [{"type": "t", "text": "Clinical significance of CA 19.9 and LINC01197 in pancreatic cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_202003_20503"}], "href": "https://doi.org/10.26355/eurrev_202003_20503"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32196587"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32196587"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Feng Zhao, Jing Dong, Jialong Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibiting role of long non-coding RNA LINC01197 in inflammation in rheumatoid arthritis through the microRNA-150/THBS2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Cell Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexcr.2020.112136"}], "href": "https://doi.org/10.1016/j.yexcr.2020.112136"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32540401"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32540401"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Qingfang Yue, Jun Bai, Fei Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel classification and risk model based on ferroptosis-related lncRNAs to predict oncologic outcomes for gastric cancer patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biochem Mol Toxicol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jbt.23052"}], "href": "https://doi.org/10.1002/jbt.23052"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35315178"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35315178"}]}]}]}
NCBI Gene ID 400456
API
Download Associations
Predicted Functions View LINC01197's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01197's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01197's ARCHS4 Predicted Functions.

Functional Associations

LINC01197 has 390 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for LINC01197 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC01197 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC01197 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC01197 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01197 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01197 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01197 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC01197 protein from the LOCATE Predicted Protein Localization Annotations dataset.