LINC01235 Gene

Name long intergenic non-protein coding RNA 1235
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have highlighted the oncogenic role of LINC01235 in multiple cancer types. In gastric cancer, elevated LINC01235 expression has been shown to promote cell migration and invasion by inducing epithelial–mesenchymal transition (EMT), in part through a positive feedback loop with the transcription factor TWIST2 and its downstream mediator THBS2."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In breast cancer, LINC01235 is significantly upregulated and correlates with advanced disease characteristics including stage, estrogen receptor status, and lymph node involvement; mechanistic studies further suggest its involvement in regulating proliferation, migration, and invasion potentially via pathways such as p53 signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, in stomach adenocarcinoma, LINC01235 has emerged as an optimal diagnostic and prognostic biomarker; its overexpression is associated with poor survival outcomes and enrichment in key oncogenic pathways including the cell cycle, DNA replication, ECM–receptor interaction, and p53 signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Collectively, these findings underscore the clinical and functional significance of LINC01235 as a driver of tumor progression and a potential therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yu-En Tan, Yao Xing, Ban-Lai Ran, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC01235-TWIST2 feedback loop facilitates epithelial-mesenchymal transition in gastric cancer by inhibiting THBS2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.103979"}], "href": "https://doi.org/10.18632/aging.103979"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33206629"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33206629"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Cheng Zhang, Yu Liang, Chun-Dong Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The novel role and function of LINC01235 in metastasis of gastric cancer cells by inducing epithelial-mesenchymal transition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2021.03.027"}], "href": "https://doi.org/10.1016/j.ygeno.2021.03.027"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33771634"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33771634"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Zhe Li, Zheng Qian, Fei Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Key lncRNA-mRNA Pairs and Functional lncRNAs in Breast Cancer by Integrative Analysis of TCGA Data."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2021.709514"}], "href": "https://doi.org/10.3389/fgene.2021.709514"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34490040"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34490040"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ye Zhao, Lixiao Liu, Jinduo Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction and Verification of a Hypoxia-Related 4-lncRNA Model for Prediction of Breast Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Gen Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/IJGM.S322007"}], "href": "https://doi.org/10.2147/IJGM.S322007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34429643"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34429643"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Qun Li, Xiaofeng Liu, Jia Gu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Screening lncRNAs with diagnostic and prognostic value for human stomach adenocarcinoma based on machine learning and mRNA-lncRNA co-expression network analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Genet Genomic Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/mgg3.1512"}], "href": "https://doi.org/10.1002/mgg3.1512"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33002344"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33002344"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xiulei Zhang, Peiming Zheng, Zhen Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Somatic Mutation Landscape and RNA Prognostic Markers in Stomach Adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S263733"}], "href": "https://doi.org/10.2147/OTT.S263733"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32801780"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32801780"}]}]}]}
NCBI Gene ID 401492
API
Download Associations
Predicted Functions View LINC01235's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01235's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01235's ARCHS4 Predicted Functions.

Functional Associations

LINC01235 has 160 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for LINC01235 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01235 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01235 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with LINC01235 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01235 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC01235 protein from the LOCATE Predicted Protein Localization Annotations dataset.