LINC01239 Gene

Name long intergenic non-protein coding RNA 1239
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Research on cancer‐related noncoding RNAs has revealed distinct roles for long intergenic noncoding RNAs (lincRNAs) in tumorigenesis. In a study of gliomas, extensive analyses of CNV‐driven dysregulated ceRNA networks involving hundreds of lncRNAs were performed, although LINC01239 was not specifically singled out in that context (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, in the setting of HBV‐infected intrahepatic cholangiocarcinoma, a distinctive intergenic insertion on chromosome 9p21.3—located between DMRTA1 and LINC01239—was shown to exert oncogenic effects through activation of the mTOR/4EBP/S6K pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " This insertion event suggests that LINC01239 (or its genomic region) may be implicated in mediating aberrant signaling cascades, thereby contributing to tumor development. Collectively, while large‐scale ceRNA network analyses in gliomas underscore the overall importance of dysregulated lncRNAs in cancer, the specific identification of an insertion event involving the LINC01239 locus in HBV‐associated cholangiocarcinomas highlights its potential role as a mediator of oncogenic mTOR pathway activation.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jinyuan Xu, Xiaobo Hou, Lin Pang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Dysregulated Competitive Endogenous RNA Networks Driven by Copy Number Variations in Malignant Gliomas."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2019.01055"}], "href": "https://doi.org/10.3389/fgene.2019.01055"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31719831"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31719831"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jihyun An, Deokhoon Kim, Bora Oh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive characterization of viral integrations and genomic aberrations in HBV-infected intrahepatic cholangiocarcinomas."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hepatology (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/hep.32135"}], "href": "https://doi.org/10.1002/hep.32135"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34478159"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34478159"}]}]}]}
NCBI Gene ID 441389
API
Download Associations
Predicted Functions View LINC01239's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01239's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01239's ARCHS4 Predicted Functions.

Functional Associations

LINC01239 has 169 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue) extracted from 6 datasets.

Click the + buttons to view associations for LINC01239 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01239 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC01239 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC01239 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with LINC01239 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01239 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC01239 protein from the LOCATE Predicted Protein Localization Annotations dataset.