LINC01249 Gene

Name long intergenic non-protein coding RNA 1249
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC01249 is a long non‐coding RNA that appears to be a component of a multi‐lncRNA signature associated with metastatic risk in breast cancer (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In this study, several lncRNAs were repurposed from microarray data and combined into a prognostic model that could stratify patients by metastasis‐free survival; although the study did not single out LINC01249 for functional dissection, its inclusion in the signature suggests that it may play a role in influencing pathways associated with tumor metastasis. Moreover, emerging evidence indicates that such non‐coding RNAs can be subjected to epigenetic modifications—as illustrated by metformin‐induced changes in DNA methylation profiles in white blood cells"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "—which may in turn affect their transcriptional activity and regulatory functions in cellular energy homeostasis, inflammatory responses, and tumorigenesis. Finally, studies identifying genetic loci associated with circulating hormone levels"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "further underscore the potential interplay between non‐coding RNAs and systemic endocrine regulation. Together, these findings imply that LINC01249 may be involved in critical regulatory networks that modulate metastatic potential in cancer and could be influenced by epigenetic as well as genetic factors, highlighting its promise as both a biomarker and a potential therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jie Sun, Xihai Chen, Zhenzhen Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep16553"}], "href": "https://doi.org/10.1038/srep16553"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26549855"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26549855"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ilze Elbere, Ivars Silamikelis, Monta Ustinova, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Significantly altered peripheral blood cell DNA methylation profile as a result of immediate effect of metformin use in healthy individuals."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Epigenetics (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13148-018-0593-x"}], "href": "https://doi.org/10.1186/s13148-018-0593-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30545422"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30545422"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Liang Huang, Fenghua Bai, Yutian Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Preliminary study of genome-wide association identified novel susceptibility genes for thyroid-related hormones in Chinese population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Genomics (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13258-021-01165-1"}], "href": "https://doi.org/10.1007/s13258-021-01165-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34533693"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34533693"}]}]}]}
NCBI Gene ID 727982
API
Download Associations
Predicted Functions View LINC01249's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01249's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01249's ARCHS4 Predicted Functions.

Functional Associations

LINC01249 has 283 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 4 datasets.

Click the + buttons to view associations for LINC01249 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC01249 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC01249 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01249 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01249 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.