| Name | long intergenic non-protein coding RNA 1282 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe SHANK family of postsynaptic scaffolding proteins plays a pivotal role in organizing the glutamatergic postsynaptic density, guiding dendritic spine formation and maturation, and ensuring efficient synaptic transmission. Disruption of SHANK1—as demonstrated by gene deletions and point mutations in various mouse models—leads to smaller, less mature dendritic spines, altered composition of postsynaptic proteins, and compromised synaptic strength that collectively contribute to learning and memory impairments. These findings underscore the essential role of SHANK1 in maintaining proper synaptic architecture and plasticity."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its well‐established role in excitatory synapses, SHANK1 is crucial for maintaining the balance between excitation and inhibition within neural circuits. Alterations in SHANK1 expression affect parvalbumin‐positive (PV+) interneurons and disrupt signaling processes that underlie social communication and cognitive performance. Mouse models harboring SHANK1 mutations display notable deficits in social interactions, communication (including ultrasonic vocalizations and scent marking), and increased repetitive behaviors—phenotypes that closely mirror core symptoms of autism spectrum disorder. These data suggest that SHANK1 dysfunction contributes to imbalances in synaptic signaling and network activity critical for proper behavioral expression."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the molecular and developmental levels, precise regulation of SHANK1 is essential for coordinating intracellular signaling pathways such as mGluR1–IP3R1–calcium cascades, which are activated during learning-induced synaptic remodeling. Moreover, developmental studies reveal that SHANK1 expression is dynamically regulated—not only in neurons but also in glial cells—hinting at broader roles in brain maturation and function. Alterations in SHANK1 levels or function can lead to compensatory changes in other synaptic proteins and receptor subunits, emphasizing its potential as a therapeutic target in neurodevelopmental disorders. Collectively, these insights highlight the central role of SHANK1 in preserving synaptic integrity and cognitive function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Albert Y Hung, Kensuke Futai, Carlo Sala, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Smaller dendritic spines, weaker synaptic transmission, but enhanced spatial learning in mice lacking Shank1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.3032-07.2008"}], "href": "https://doi.org/10.1523/JNEUROSCI.3032-07.2008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18272690"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18272690"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Janin Schütt, Katrin Falley, Dietmar Richter, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Fragile X mental retardation protein regulates the levels of scaffold proteins and glutamate receptors in postsynaptic densities."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M109.042663"}], "href": "https://doi.org/10.1074/jbc.M109.042663"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19640847"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19640847"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jill L Silverman, Sarah M Turner, Charlotte L Barkan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sociability and motor functions in Shank1 mutant mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.brainres.2010.09.026"}], "href": "https://doi.org/10.1016/j.brainres.2010.09.026"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20868654"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20868654"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Markus Wöhr, Florence I Roullet, Albert Y Hung, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Communication impairments in mice lacking Shank1: reduced levels of ultrasonic vocalizations and scent marking behavior."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0020631"}], "href": "https://doi.org/10.1371/journal.pone.0020631"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21695253"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21695253"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "A Özge Sungur, Karl J Vörckel, Rainer K W Schwarting, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Repetitive behaviors in the Shank1 knockout mouse model for autism spectrum disorder: developmental aspects and effects of social context."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci Methods (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jneumeth.2014.05.003"}], "href": "https://doi.org/10.1016/j.jneumeth.2014.05.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24820912"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24820912"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jeremy P Braude, Sarath Vijayakumar, Katherine Baumgarner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deletion of Shank1 has minimal effects on the molecular composition and function of glutamatergic afferent postsynapses in the mouse inner ear."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hear Res (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.heares.2015.01.008"}], "href": "https://doi.org/10.1016/j.heares.2015.01.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25637745"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25637745"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Wenjie Mao, Takuya Watanabe, Sukhee Cho, et al. 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| NCBI Gene ID | 101927449 |
| API | |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC01282 has 3 functional associations with biological entities spanning 1 categories (gene, protein or microRNA) extracted from 1 datasets.
Click the + buttons to view associations for LINC01282 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC01282 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |