LINC01312 Gene

Name long intergenic non-protein coding RNA 1312
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC01312 emerges as a gene of interest in two distinct contexts. In a study of otofaciocervical syndrome (OTFCS), a chromosomal deletion in 6q23—identified in a mother–daughter pair presenting with facial dysmorphisms, ear abnormalities with hearing loss, and shoulder girdle anomalies—highlighted a minimal overlapping region that includes LINC01312, suggesting that its loss or altered regulation may contribute to the OTFCS phenotype through disruption of developmental pathways, potentially linked to the Pax‐Six‐Eya‐Dach network."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In a separate study focused on lung adenocarcinoma (LAC), LINC01312 was one of ten genes identified via multivariate Cox regression modeling that stratified patients into distinct risk groups with differences in long-term outcomes. Here, the expression level of LINC01312—when integrated into a risk score staging system—proved to be a significant prognostic marker, distinguishing between high-risk patients with poorer outcomes and low-risk patients with better survival prospects."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Simone Gana, Angelo Valetto, Benedetta Toschi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Familial Interstitial 6q23.2 Deletion Including Eya4 Associated With Otofaciocervical Syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2019.00650"}], "href": "https://doi.org/10.3389/fgene.2019.00650"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31379922"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31379922"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yan-Yan Li, Chun Yang, Pingting Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-scale analysis to identify prognostic markers and predict the survival of lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.27144"}], "href": "https://doi.org/10.1002/jcb.27144"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30105759"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30105759"}]}]}]}
NCBI Gene ID 154089
API
Download Associations
Predicted Functions View LINC01312's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01312's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01312's ARCHS4 Predicted Functions.

Functional Associations

LINC01312 has 318 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for LINC01312 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC01312 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC01312 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01312 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
dbGAP Gene-Trait Associations traits associated with LINC01312 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01312 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01312 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.