LINC01416 Gene

Name long intergenic non-protein coding RNA 1416
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nInterphotoreceptor retinoid‐binding protein (IRBP) plays a critical role in maintaining immune tolerance in the eye. Studies have demonstrated that thymic expression of IRBP is important for deleting autoreactive T cells, and lack of its expression can predispose to organ‐specific autoimmunity such as autoimmune uveitis. In murine models, loss or altered presentation of IRBP dramatically shifts T‐cell epitope recognition and can result in an exacerbated inflammatory response mediated in part by γδ T cells. These findings indicate that IRBP functions as a key endogenous self‐antigen that sets the threshold for immune activation against retinal tissues."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its immunologic role, IRBP is essential for proper visual function. Secreted by photoreceptors into the interphotoreceptor matrix, it serves as a transport protein for retinoids—including the critical 11‐cis‐retinol and 11‐cis‐retinal—thereby facilitating the visual cycle, preserving the integrity of photoreceptor cells (especially cones), and protecting their isomeric state under light conditions. Disruption of IRBP function or mutations that impair its secretion can lead to a retinoid deficiency, triggering cellular stress and contributing to progressive retinal degeneration. This multifaceted role in retinoid delivery and photoreceptor survival underscores its significance in cone‐specific visual pathways."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its primary roles in immune regulation and retinoid trafficking, IRBP is also implicated in retinal cell homeostasis and intercellular communication. Its expression is modulated by external signals from Müller cells and is essential for normal retinal development and protection against degenerative processes. Notably, experimental models have shown that IRBP deficiency may be associated with not only retinal degeneration but also with refractive errors in the developing eye, while in other contexts, loss of IRBP per se does not predispose photoreceptors to oncogenic transformation. Together, these studies suggest that IRBP integrates developmental, metabolic, and stress‐related signals to maintain retinal structure and function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "15"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jason DeVoss, Yafei Hou, Kellsey Johannes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Spontaneous autoimmunity prevented by thymic expression of a single self-antigen."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Med (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1084/jem.20061864"}], "href": "https://doi.org/10.1084/jem.20061864"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17116738"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17116738"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yan Cui, Hui Shao, Chen Lan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Major role of gamma delta T cells in the generation of IL-17+ uveitogenic T cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.0900241"}], "href": "https://doi.org/10.4049/jimmunol.0900241"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19542467"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19542467"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Dody Avichezer, Gregory I Liou, Chi-Chao Chan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interphotoreceptor retinoid-binding protein (IRBP)-deficient C57BL/6 mice have enhanced immunological and immunopathogenic responses to IRBP and an altered recognition of IRBP epitopes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Autoimmun (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jaut.2003.08.004"}], "href": "https://doi.org/10.1016/j.jaut.2003.08.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14599843"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14599843"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Joanne Boldison, Tarnjit K Khera, David A Copland, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel pathogenic RBP-3 peptide reveals epitope spreading in persistent experimental autoimmune uveoretinitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunology (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/imm.12503"}], "href": "https://doi.org/10.1111/imm.12503"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26152845"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26152845"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kota Sato, Songhua Li, William C Gordon, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Receptor interacting protein kinase-mediated necrosis contributes to cone and rod photoreceptor degeneration in the retina lacking interphotoreceptor retinoid-binding protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.1380-13.2013"}], "href": "https://doi.org/10.1523/JNEUROSCI.1380-13.2013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24174679"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24174679"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Ryan Parker, Jin-Shan Wang, Vladimir J Kefalov, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interphotoreceptor retinoid-binding protein as the physiologically relevant carrier of 11-cis-retinol in the cone visual cycle."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.3722-10.2011"}], "href": "https://doi.org/10.1523/JNEUROSCI.3722-10.2011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21430170"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21430170"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Ryan O Parker, Jie Fan, John M Nickerson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Normal cone function requires the interphotoreceptor retinoid binding protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.0063-09.2009"}], "href": "https://doi.org/10.1523/JNEUROSCI.0063-09.2009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19357286"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19357286"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Songhua Li, Zhihui Yang, Jane Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Secretory defect and cytotoxicity: the potential disease mechanisms for the retinitis pigmentosa (RP)-associated interphotoreceptor retinoid-binding protein (IRBP)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.418251"}], "href": "https://doi.org/10.1074/jbc.M112.418251"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23486466"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23486466"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Ryan O Parker, Rosalie K Crouch "}, {"type": "b", "children": [{"type": "t", "text": "The interphotoreceptor retinoid binding (IRBP) is essential for normal retinoid processing in cone photoreceptors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Adv Exp Med Biol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/978-1-4419-1399-9_17"}], "href": "https://doi.org/10.1007/978-1-4419-1399-9_17"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20238012"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20238012"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Marc Vooijs, Hein te Riele, Martin van der Valk, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor formation in mice with somatic inactivation of the retinoblastoma gene in interphotoreceptor retinol binding protein-expressing cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.onc.1205575"}], "href": "https://doi.org/10.1038/sj.onc.1205575"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12096340"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12096340"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Jeffrey Wisard, Amanda Faulkner, Micah A Chrenek, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exaggerated eye growth in IRBP-deficient mice in early development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.10-7129"}], "href": "https://doi.org/10.1167/iovs.10-7129"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21642628"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21642628"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Ling Zhu, Weiyong Shen, Brian Lyons, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dysregulation of inter-photoreceptor retinoid-binding protein (IRBP) after induced Müller cell disruption."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurochem (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jnc.13075"}], "href": "https://doi.org/10.1111/jnc.13075"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25692504"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25692504"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Ying Chen, Zilin Chen, Wai Po Chong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comparative Analysis of the Interphotoreceptor Retinoid Binding ProteinInduced Models of Experimental Autoimmune Uveitis in B10.RIII versus C57BL/6 Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Mol Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/1566524019666190112132610"}], "href": "https://doi.org/10.2174/1566524019666190112132610"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30636608"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30636608"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "R Keith Shuler, Eleanore Gross, Wei-Ya He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sequence analysis of the mouse IRBP gene and cDNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Eye Res (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1076/ceyr.24.5.354.8518"}], "href": "https://doi.org/10.1076/ceyr.24.5.354.8518"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12434304"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12434304"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Tatiana E Getz, Micah A Chrenek, Jack T Papania, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Conditional Knockouts of Interphotoreceptor Retinoid Binding Protein Suggest Two Independent Mechanisms for Retinal Degeneration and Myopia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.65.6.32"}], "href": "https://doi.org/10.1167/iovs.65.6.32"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38904640"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38904640"}]}]}]}
NCBI Gene ID 101927273
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Predicted Functions View LINC01416's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01416's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01416's ARCHS4 Predicted Functions.

Functional Associations

LINC01416 has 0 functional associations with biological entities spanning 0 categories () extracted from 0 datasets.

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Dataset Summary