LINC01500 Gene

Name long intergenic non-protein coding RNA 1500
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n A recent case–control study evaluated 88 single nucleotide polymorphisms (SNPs) linked to colorectal cancer (CRC) risk in first‐degree relatives of CRC patients versus controls. One of the most significant findings was related to a SNP within the long noncoding RNA LINC01500. Specifically, the rs17094983G>A variant in LINC01500 was associated with a lower risk of CRC (odds ratio = 0.72), suggesting that allelic differences in LINC01500 might confer a protective effect. Although the study focused on genotype distribution rather than elucidating a detailed biological mechanism, this association implies that LINC01500 may modulate genetic susceptibility to CRC in familial cases and could potentially serve as a biomarker for identifying individuals who might benefit from enhanced surveillance and tailored screening programs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Carla J Gargallo-Puyuelo, Ángel Lanas, Patricia Carrera-Lasfuentes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Familial Colorectal Cancer and Genetic Susceptibility: Colorectal Risk Variants in First-Degree Relatives of Patients With Colorectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Transl Gastroenterol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.14309/ctg.0000000000000301"}], "href": "https://doi.org/10.14309/ctg.0000000000000301"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33534415"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33534415"}]}]}]}
NCBI Gene ID 102723742
API
Download Associations
Predicted Functions View LINC01500's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01500's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01500's ARCHS4 Predicted Functions.

Functional Associations

LINC01500 has 3 functional associations with biological entities spanning 1 categories (gene, protein or microRNA) extracted from 2 datasets.

Click the + buttons to view associations for LINC01500 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01500 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC01500 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.