LINC01549 Gene

Name long intergenic non-protein coding RNA 1549
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNAs (lncRNAs) have emerged as key regulators in many human diseases, including cancer. In one recent study focused on hepatocellular carcinoma (HCC) with underlying cirrhosis, LINC01549 was identified as one of four lncRNAs (along with LINC02086, LINC00880, and AC136475.3) used to develop a risk scoring system that independently predicts overall survival (OS) in affected patients."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Functional enrichment analyses in that work suggested that the implicated lncRNAs—including LINC01549—are involved in oncogenic pathways such as Wnt signaling and cytokine–cytokine receptor interactions, which are known to influence tumor progression. As accumulating evidence supports the broader role of lncRNAs in cancer biology—for example, in regulating proliferation, migration, survival, and genomic stability in oral squamous cell carcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "and as emerging biomarkers in breast cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "—the specific inclusion of LINC01549 in the HCC risk model underscores its potential clinical relevance as a prognostic biomarker. This focus on lncRNAs complements studies in other disease contexts, such as Down syndrome"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "and cardiovascular event risk among African Americans"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ", although in those settings the role of LINC01549 itself was not highlighted. Together, these findings suggest that further investigation of LINC01549 may provide novel insights into HCC pathogenesis and support its potential utility in clinical prognostication.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jiaxiang Ye, Haixia Li, Jiazhang Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Risk Scoring System based on lncRNA Expression for Predicting Survival in Hepatocellular Carcinoma with Cirrhosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Asian Pac J Cancer Prev (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.31557/APJCP.2020.21.6.1787"}], "href": "https://doi.org/10.31557/APJCP.2020.21.6.1787"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32592379"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32592379"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Lei Zhang, Xiang Meng, Xin-Wei Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNAs in Oral squamous cell carcinoma: biologic function, mechanisms and clinical implications."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12943-019-1021-3"}], "href": "https://doi.org/10.1186/s12943-019-1021-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31133028"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31133028"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Joelle Makoukji, Nadine J Makhoul, Maya Khalil, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gene expression profiling of breast cancer in Lebanese women."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep36639"}], "href": "https://doi.org/10.1038/srep36639"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27857161"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27857161"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Arnaud Duchon, Stéphanie Pothion, Véronique Brault, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The telomeric part of the human chromosome 21 from Cstb to Prmt2 is not necessary for the locomotor and short-term memory deficits observed in the Tc1 mouse model of Down syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Behav Brain Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbr.2010.10.023"}], "href": "https://doi.org/10.1016/j.bbr.2010.10.023"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21047530"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21047530"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Aditi Shendre, Marguerite R Irvin, Howard Wiener, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Local Ancestry and Clinical Cardiovascular Events Among African Americans From the Atherosclerosis Risk in Communities Study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Heart Assoc (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/JAHA.116.004739"}], "href": "https://doi.org/10.1161/JAHA.116.004739"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28396569"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28396569"}]}]}]}
Synonyms C21ORF37
Proteins CU037_HUMAN
NCBI Gene ID 100505929
API
Download Associations
Predicted Functions View LINC01549's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01549's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01549's ARCHS4 Predicted Functions.

Functional Associations

LINC01549 has 462 functional associations with biological entities spanning 5 categories (molecular profile, organism, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for LINC01549 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC01549 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01549 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC01549 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01549 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC01549 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC01549 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC01549 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC01549 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC01549 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with LINC01549 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC01549 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of LINC01549 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC01549 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01549 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC01549 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC01549 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.