| Name | long intergenic non-protein coding RNA 1556 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent genomic studies have begun to elucidate novel roles for non‐coding loci in disease, with one emerging candidate being LINC01556. Although early work focused on deep annotation of the human major histocompatibility complex (MHC), providing a high‐resolution map of over 300 loci and extensive variation within the MHC region (1), subsequent epigenetic investigations have expanded our understanding of such loci. Notably, in a study exploring the epigenetic underpinnings of diabetic retinopathy (DR) in type 2 diabetes mellitus (T2DM), LINC01556 was identified as part of a three‐gene signature – alongside MESP1 and LY6G6D – whose 5‑hydroxymethylcytosine (5hmC) profiles in circulating cell‑free DNA accurately distinguished DR patients from T2DM controls (2). This finding suggests that modifications at the LINC01556 locus may be associated with the pathogenesis of microvascular complications and might serve as a non‑invasive biomarker for early detection and monitoring of DR. Together, these studies underscore the expanding role of epigenetic markers and non‑coding RNAs like LINC01556 in both genomic annotation and disease diagnostics."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Roger Horton, Richard Gibson, Penny Coggill, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunogenetics (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00251-007-0262-2"}], "href": "https://doi.org/10.1007/s00251-007-0262-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18193213"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18193213"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Liyuan Han, Chang Chen, Xingyu Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alterations of 5-hydroxymethylcytosines in circulating cell-free DNA reflect retinopathy in type 2 diabetes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2020.11.014"}], "href": "https://doi.org/10.1016/j.ygeno.2020.11.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33221518"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33221518"}]}]}]}
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| Synonyms | C6ORF100, DJ25J6.5 |
| Proteins | CF100_HUMAN |
| NCBI Gene ID | 729583 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC01556 has 159 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue) extracted from 7 datasets.
Click the + buttons to view associations for LINC01556 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC01556 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC01556 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| GAD Gene-Disease Associations | diseases associated with LINC01556 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC01556 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of LINC01556 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with LINC01556 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC01556 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |