LINC01559 Gene

Name long intergenic non-protein coding RNA 1559
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC01559 is a long intergenic noncoding RNA that has been found to be upregulated in several human cancers, including pancreatic, gastric, hepatocellular, colorectal, lung, and renal cell carcinomas, and is also implicated as a genetic modifier in Huntington disease. Functionally, LINC01559 generally acts as an oncogene by promoting cell proliferation, migration, invasion, tumor growth, and chemoresistance.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In pancreatic cancer, LINC01559 is highly expressed and enhances tumor progression by serving as a competing endogenous RNA (ceRNA). It sponges microRNAs such as miR‑607 and miR‑1343‑3p to derepress key effectors – for instance, increasing Yes‑associated protein (YAP) activity through both sequestration of miR‑607 and direct interaction that inhibits YAP phosphorylation, as well as upregulating RAF1 to activate the ERK pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In gastric cancer, elevated LINC01559 not only promotes proliferation and migration but also regulates epithelial–mesenchymal transition. Its transcription is activated by ZEB1, and it in turn recruits IGF2BP2 to stabilize ZEB1 mRNA, establishing a positive feedback loop. Moreover, LINC01559 can be transferred to cancer cells via mesenchymal stem cell–derived exosomes where it sponges miR‑1343‑3p to upregulate PGK1 and cooperates with EZH2 to repress PTEN expression, thereby activating the PI3K/AKT signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In hepatocellular carcinoma, studies indicate that LINC01559 contributes to aggressive cell behavior and chemoresistance by sponging miR‑6783‑3p and miR‑511, which leads to the upregulation of targets like SLC38A1 that drive malignant phenotypes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Similarly, in colorectal cancer, LINC01559 promotes tumor progression by acting as a ceRNA against miR‑1343‑3p to modulate PARP1 and further influence the PTEN/AKT pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In lung adenocarcinoma, increased levels of LINC01559 have been correlated with lymph node metastasis and poor prognosis; mechanistic studies suggest that it enhances proliferation and migration by promoting autophagy via miR‑1343‑3p sponging."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, LINC01559 is emerging as a component of prognostic gene signatures in hepatocellular and renal cell carcinomas, where its expression can serve as a diagnostic biomarker and may help in stratifying patient risk."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond cancer, genetic variation within the LINC01559 locus has been associated with modifying the age of onset in Huntington disease, highlighting a potential role in non‐oncogenic processes as well."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, LINC01559 exerts its oncogenic functions primarily by acting as a sponge for specific microRNAs, thereby modulating key signaling pathways such as YAP/RAF1–ERK, PI3K/AKT, and PTEN/AKT. Its involvement in multiple cancer-related processes and in chemoresistance underscores its potential as both a prognostic biomarker and a therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Changjie Lou, Juan Zhao, Yuanlong Gu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC01559 accelerates pancreatic cancer cell proliferation and migration through YAP-mediated pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29288"}], "href": "https://doi.org/10.1002/jcp.29288"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31608998"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31608998"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiao Chen, Jie Wang, Fei Xie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC01559 promotes pancreatic cancer progression by acting as a competing endogenous RNA of miR-1343-3p to upregulate RAF1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.103487"}], "href": "https://doi.org/10.18632/aging.103487"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32678071"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32678071"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Huojian Shen, Hongyi Zhu, Yuanwen Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZEB1-induced LINC01559 expedites cell proliferation, migration and EMT process in gastric cancer through recruiting IGF2BP2 to stabilize ZEB1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-021-03571-5"}], "href": "https://doi.org/10.1038/s41419-021-03571-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33824282"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33824282"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Liyan Wang, Xiaotong Bo, Xiaoyuan Yi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exosome-transferred LINC01559 promotes the progression of gastric cancer via PI3K/AKT signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-020-02810-5"}], "href": "https://doi.org/10.1038/s41419-020-02810-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32895368"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32895368"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Shunbin Dong, Ying Fu, Kaibo Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Linc01559 Served as a Potential Oncogene and Promoted Resistance of Hepatocellular Carcinoma to Oxaliplatin by Directly Sponging miR-6783-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Anticancer Agents Med Chem (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/1871520620666200721122317"}], "href": "https://doi.org/10.2174/1871520620666200721122317"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32698745"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32698745"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Quanwu Su, Hongxia Wang "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA 01559 mediates the malignant phenotypes of hepatocellular carcinoma cells through targeting miR-511."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Res Hepatol Gastroenterol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.clinre.2021.101648"}], "href": "https://doi.org/10.1016/j.clinre.2021.101648"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33588099"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33588099"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Hui Li, Jie Liu, Yiqin Lai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC01559 promotes colorectal cancer via sponging miR-1343-3p to modulate PARP1/PTEN/AKT pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Res Pract (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.prp.2021.153521"}], "href": "https://doi.org/10.1016/j.prp.2021.153521"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34329839"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34329839"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Zhuochen Zhao, Junhu Wan, Manman Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC01559 exerts oncogenic role via enhancing autophagy in lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell Int (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12935-021-02338-4"}], "href": "https://doi.org/10.1186/s12935-021-02338-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34823534"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34823534"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Ning Li, Haiying Zhang, Keyao Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel long non-coding RNA-based prognostic signature for renal cell carcinoma patients with stage IV and histological grade G4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1971022"}], "href": "https://doi.org/10.1080/21655979.2021.1971022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34499010"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34499010"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Binghai Chen, Chengyue Wang, Jin Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell Int (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12935-018-0652-6"}], "href": "https://doi.org/10.1186/s12935-018-0652-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30337839"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30337839"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Zhiqiao Zhang, Yanling Ouyang, Yiyan Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive bioinformatics analysis reveals potential lncRNA biomarkers for overall survival in patients with hepatocellular carcinoma: an on-line individual risk calculator based on TCGA cohort."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell Int (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12935-019-0890-2"}], "href": "https://doi.org/10.1186/s12935-019-0890-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31312112"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31312112"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Leire Valcárcel-Ocete, Gorka Alkorta-Aranburu, Mikel Iriondo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exploring Genetic Factors Involved in Huntington Disease Age of Onset: E2F2 as a New Potential Modifier Gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0131573"}], "href": "https://doi.org/10.1371/journal.pone.0131573"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26148071"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26148071"}]}]}]}
Synonyms C12ORF36
Proteins CL036_HUMAN
NCBI Gene ID 283422
API
Download Associations
Predicted Functions View LINC01559's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01559's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01559's ARCHS4 Predicted Functions.

Functional Associations

LINC01559 has 670 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 25 datasets.

Click the + buttons to view associations for LINC01559 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC01559 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC01559 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01559 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with LINC01559 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC01559 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC01559 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01559 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores diseases associated with LINC01559 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC01559 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC01559 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC01559 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01559 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC01559 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC01559 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC01559 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with LINC01559 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC01559 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of LINC01559 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC01559 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01559 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC01559 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC01559 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
NURSA Protein Complexes protein complexs containing LINC01559 protein recovered by IP-MS from the NURSA Protein Complexes dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC01559 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC01559 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.