LINC01561 Gene

Name long intergenic non-protein coding RNA 1561
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies indicate that LINC01561, a novel oncogenic long non‐coding RNA, plays a critical role in tumor progression across multiple cancer types. In breast cancer cells, elevated LINC01561 expression is associated with reduced miR‐145‑5p levels and increased MMP11 expression; silencing LINC01561 results in upregulation of miR‑145‑5p, subsequent downregulation of MMP11, inhibition of cell proliferation, and enhanced apoptosis—findings that support a competing endogenous RNA (ceRNA) mechanism."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In non‐small‐cell lung carcinoma, LINC01561 is markedly overexpressed under the transcriptional control of SOX2. It exerts its tumor‐promoting effects by directly binding to miR‑760, thereby relieving repression of its target SHCBP1, which in turn facilitates cell proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Furthermore, integrative expression analyses in lung squamous cell carcinoma have implicated LINC01561 within broader non‐coding RNA regulatory networks governing key oncogenic hub genes, thereby underscoring its potential contribution to malignant progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Collectively, these findings highlight the critical regulatory function of LINC01561 in modulating microRNA activity and downstream oncogene expression, suggesting that it may serve as a promising diagnostic biomarker and therapeutic target in cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rui Jiang, Chunming Zhao, Binbin Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mixomics analysis of breast cancer: Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biochem Cell Biol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biocel.2018.06.003"}], "href": "https://doi.org/10.1016/j.biocel.2018.06.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29890225"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29890225"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Wei Gao, Chao-Qun Qi, Mao-Guo Feng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SOX2-induced upregulation of lncRNA LINC01561 promotes non-small-cell lung carcinoma progression by sponging miR-760 to modulate SHCBP1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29564"}], "href": "https://doi.org/10.1002/jcp.29564"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32003010"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32003010"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yangfeng Shi, Yeping Li, Chao Yan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of key genes and evaluation of clinical outcomes in lung squamous cell carcinoma using integrated bioinformatics analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.10933"}], "href": "https://doi.org/10.3892/ol.2019.10933"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31788059"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31788059"}]}]}]}
Synonyms C10ORF85
Proteins CJ085_HUMAN
NCBI Gene ID 404216
API
Download Associations
Predicted Functions View LINC01561's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC01561's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC01561's ARCHS4 Predicted Functions.

Functional Associations

LINC01561 has 273 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for LINC01561 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC01561 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of LINC01561 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC01561 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC01561 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC01561 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC01561 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC01561 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC01561 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC01561 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of LINC01561 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of LINC01561 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC01561 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores tissues with high expression of LINC01561 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset.