LINC02649 Gene

Name long intergenic non-protein coding RNA 2649
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided abstracts directly mention or describe LINC02649, a careful review of the literature reveals a detailed landscape of calcium‐handling mechanisms mediated by sarco/endoplasmic reticulum Ca²⁺‐ATPases (SERCAs) that may indirectly contextualize where LINC02649 could be functionally relevant. In pancreatic β‐cells, for example, SERCA3 is not required for maintaining basal cytosolic Ca²⁺ levels but becomes activated under stimulatory conditions—particularly during glucose‐induced Ca²⁺ oscillations—thus ensuring precise insulin secretion. In complementary studies, the modulation of SERCA expression via insulin receptor substrate (IRS) signaling links defects in SERCA2b and SERCA3 transcription to impaired intracellular Ca²⁺ oscillations and insulin secretory responses. These findings underscore the critical role of ER Ca²⁺ reuptake in metabolic regulation and hint that any factor, such as a long noncoding RNA like LINC02649 (if involved), might impact similar processes in β‐cell physiology."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond the β‐cell, SERCA3 plays a distinct role in platelet physiology. Studies show that SERCA3‐dependent Ca²⁺ stores are essential for a specific adenosine diphosphate (ADP) secretion pathway that facilitates full platelet activation, especially when the stimulation is weak. Disruption of SERCA3 function—either by genetic deletion or pharmacological inhibition—leads to impaired Ca²⁺ mobilization, reduced secretion, and ultimately compromised platelet adhesion and thrombus formation. These tissue‐specific roles of SERCA isoforms illustrate the nuanced control of intracellular Ca²⁺ necessary for diverse cellular functions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition, the transcriptional regulation of SERCA3 in endothelial cells further emphasizes the importance of precise Ca²⁺ handling. A minimal promoter region containing ETS‐binding and Sp1 elements drives basal SERCA3 expression, demonstrating that transcription factor interplay is vital for maintaining proper ER Ca²⁺ levels. Meanwhile, separate research on cardiac remodeling—specifically the balance between atrial natriuretic peptide and aldosterone signaling—underscores broader systemic mechanisms that, although not directly linked to SERCA regulation, highlight the intricacy of intercellular signaling in cardiovascular homeostasis. In light of these studies, while the specific function of LINC02649 is not defined within this collection of abstracts, any future work identifying an association with LINC02649 may benefit from insights into these SERCA‐mediated Ca²⁺ regulatory pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Abdelilah Arredouani, Yves Guiot, Jean-Christophe Jonas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SERCA3 ablation does not impair insulin secretion but suggests distinct roles of different sarcoendoplasmic reticulum Ca(2+) pumps for Ca(2+) homeostasis in pancreatic beta-cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetes (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2337/diabetes.51.11.3245"}], "href": "https://doi.org/10.2337/diabetes.51.11.3245"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12401716"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12401716"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Magalie A Ravier, Dorothée Daro, Leticia Prates Roma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mechanisms of control of the free Ca2+ concentration in the endoplasmic reticulum of mouse pancreatic β-cells: interplay with cell metabolism and [Ca2+]c and role of SERCA2b and SERCA3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetes (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2337/db10-1543"}], "href": "https://doi.org/10.2337/db10-1543"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21885870"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21885870"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Rohit N Kulkarni, Michael G Roper, Gabriella Dahlgren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Islet secretory defect in insulin receptor substrate 1 null mice is linked with reduced calcium signaling and expression of sarco(endo)plasmic reticulum Ca2+-ATPase (SERCA)-2b and -3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetes (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2337/diabetes.53.6.1517"}], "href": "https://doi.org/10.2337/diabetes.53.6.1517"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15161756"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15161756"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Prabhakar D Borge, Bryan A Wolf "}, {"type": "b", "children": [{"type": "t", "text": "Insulin receptor substrate 1 regulation of sarco-endoplasmic reticulum calcium ATPase 3 in insulin-secreting beta-cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M209521200"}], "href": "https://doi.org/10.1074/jbc.M209521200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12524443"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12524443"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ziane Elaïb, Frédéric Adam, Eliane Berrou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Full activation of mouse platelets requires ADP secretion regulated by SERCA3 ATPase-dependent calcium stores."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2015-10-678383"}], "href": "https://doi.org/10.1182/blood-2015-10-678383"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27301859"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27301859"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Miao Feng, Ziane Elaïb, Delphine Borgel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NAADP/SERCA3-Dependent Ca"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "2+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " Stores Pathway Specifically Controls Early Autocrine ADP Secretion Potentiating Platelet Activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCRESAHA.119.316090"}], "href": "https://doi.org/10.1161/CIRCRESAHA.119.316090"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32588751"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32588751"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Lahouaria Hadri, Anne Ozog, Fabrice Soncin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Basal transcription of the mouse sarco(endo)plasmic reticulum Ca2+-ATPase type 3 gene in endothelial cells is controlled by Ets-1 and Sp1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M204731200"}], "href": "https://doi.org/10.1074/jbc.M204731200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12119294"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12119294"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Hitoshi Nakagawa, Heike Oberwinkler, Viacheslav O Nikolaev, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Atrial natriuretic peptide locally counteracts the deleterious effects of cardiomyocyte mineralocorticoid receptor activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Heart Fail (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCHEARTFAILURE.113.000885"}], "href": "https://doi.org/10.1161/CIRCHEARTFAILURE.113.000885"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25027872"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25027872"}]}]}]}
NCBI Gene ID 399715
API
Download Associations
Predicted Functions View LINC02649's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC02649's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC02649's ARCHS4 Predicted Functions.

Functional Associations

LINC02649 has 1 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.

Click the + buttons to view associations for LINC02649 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC02649 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.