LMCD1-AS1 Gene

Name LMCD1 antisense RNA 1 (head to head)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LMCD1‐AS1 is an oncogenic long noncoding RNA that has emerged as a critical regulator in several human diseases, most notably various cancers. In hepatocellular carcinoma, LMCD1‐AS1 acts as a competing endogenous RNA by sponging let‐7g, which results in the upregulation of P4HA2, an enzyme crucial for collagen formation; this mechanism contributes to abnormal extracellular matrix deposition and tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In cholangiocarcinoma, LMCD1‐AS1 is transcriptionally activated by E2F1 and similarly functions as a molecular sponge for miR‐345‐5p. This interaction relieves miR‐345‐5p–mediated repression of COL6A3, thereby promoting cell proliferation, invasion, and overall tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In osteosarcoma, elevated LMCD1‐AS1 expression—driven in part by the transcription factor SP1—enhances tumor cell proliferation, migration, and epithelial–mesenchymal transition via sequestering miR‐106b‐5p, correlating with aggressive disease and poor prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, genome‐wide association studies have implicated variants in the GRM7|LMCD1‐AS1 intergenic region in increased susceptibility to acute kidney injury following coronary bypass grafting, suggesting a broader clinical relevance in injury responses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Additional studies have extended the oncogenic role of LMCD1‐AS1 to other malignancies. In thyroid cancer, LMCD1‐AS1 is upregulated through a feedback mechanism involving GLI2 and acts as a sponge for miR‐1287‐5p to further elevate GLI2 expression, thereby enhancing cell proliferation, migration, and stemness properties."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Similarly, in non-small cell lung cancer, LMCD1‐AS1 promotes tumor progression by binding miR‐526b‐3p, which leads to increased expression of OSBPL5 and subsequently supports cell proliferation, migration, invasion, and the epithelial–mesenchymal transition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " A recent review further consolidates the protumorigenic functions of LMCD1‐AS1 across multiple cancer types by highlighting its capacity to modulate diverse signaling pathways through interactions with different microRNAs and transcription factors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Finally, while studies of genetic contributors to acute kidney injury remain limited, unbiased genomic investigations have pointed to the GRM7|LMCD1‐AS1 locus as a potential susceptibility factor, underscoring the multifaceted roles of this lncRNA in both cancer and non-malignant conditions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies emphasize that LMCD1‐AS1 contributes to tumorigenesis and disease progression by acting as a microRNA sponge that deregulates key downstream effectors involved in extracellular matrix remodeling, cell proliferation, invasion, and apoptosis. Its diverse mechanisms of action across different tissues highlight the potential of LMCD1‐AS1 as both a diagnostic biomarker and a therapeutic target in oncology and other clinical settings.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tianjiao Wang, Xueli Fu, Tianzhi Jin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Aspirin targets P4HA2 through inhibiting NF-κB and LMCD1-AS1/let-7g to inhibit tumour growth and collagen deposition in hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EBioMedicine (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ebiom.2019.06.048"}], "href": "https://doi.org/10.1016/j.ebiom.2019.06.048"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31278071"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31278071"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jing Yu, Bingquan Zhang, Han Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "E2F1-induced upregulation of long non-coding RNA LMCD1-AS1 facilitates cholangiocarcinoma cell progression by regulating miR-345-5p/COL6A3 pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2019.03.054"}], "href": "https://doi.org/10.1016/j.bbrc.2019.03.054"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30876691"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30876691"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jia-Wen He, De-Jian Li, Jian-Hua Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SP1-mediated upregulation of lncRNA LMCD1-AS1 functions a ceRNA for miR-106b-5p to facilitate osteosarcoma progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2020.03.151"}], "href": "https://doi.org/10.1016/j.bbrc.2020.03.151"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32248969"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32248969"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Mark Stafford-Smith, Yi-Ju Li, Joseph P Mathew, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Kidney Int (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ki.2015.161"}], "href": "https://doi.org/10.1038/ki.2015.161"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26083657"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26083657"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jie Shao, Yonggang Xu, Haixia Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LMCD1 antisense RNA 1 (LMCD1-AS1) potentiates thyroid cancer cell growth and stemness via a positive feedback loop of LMCD1-AS1/miR-1287-5p/GLI2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Transl Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.21037/atm-20-7182"}], "href": "https://doi.org/10.21037/atm-20-7182"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33313253"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33313253"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Rui Hu, Yankai Yu, Haining Wang "}, {"type": "b", "children": [{"type": "t", "text": "The LMCD1-AS1/miR-526b-3p/OSBPL5 axis promotes cell proliferation, migration and invasion in non-small cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Pulm Med (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12890-022-01820-7"}], "href": "https://doi.org/10.1186/s12890-022-01820-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35000595"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35000595"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Nesil Yalman "}, {"type": "b", "children": [{"type": "t", "text": "LMCD1 antisense RNA 1 is a newly identified long noncoding RNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Anticancer Drugs (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/CAD.0000000000001124"}], "href": "https://doi.org/10.1097/CAD.0000000000001124"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34232945"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34232945"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Daniel B Larach, Milo C Engoren, Ellen M Schmidt, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic variants and acute kidney injury: A review of the literature."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Crit Care (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jcrc.2017.11.019"}], "href": "https://doi.org/10.1016/j.jcrc.2017.11.019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29161666"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29161666"}]}]}]}
NCBI Gene ID 100288428
API
Download Associations
Predicted Functions View LMCD1-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View LMCD1-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LMCD1-AS1's ARCHS4 Predicted Functions.

Functional Associations

LMCD1-AS1 has 718 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for LMCD1-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LMCD1-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LMCD1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LMCD1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LMCD1-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LMCD1-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LMCD1-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with LMCD1-AS1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LMCD1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LMCD1-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LMCD1-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.