LRATD1 Gene

Name LRAT domain containing 1
Description Involved in cell morphogenesis and cell motility. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have increasingly implicated the gene FAM84A in a variety of biological processes that influence cell behavior and disease progression. In several cancer types—including colorectal, liver, and thyroid cancers—FAM84A is frequently up‐regulated, where its increased expression appears to promote cell motility, migration, and epithelial–mesenchymal transition. In colorectal cancer cells, ectopic expression of FAM84A enhanced motility and was correlated with phosphorylation‐dependent changes in cell morphology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In liver tumor models promoted by prolonged phenobarbital exposure, FAM84A was identified as a transcriptional target of the nuclear xenobiotic receptor CAR, with its up‐regulation corresponding to increased cell migration during tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In papillary thyroid carcinoma, elevated levels of FAM84A were associated with larger tumor size, increased lymph node metastasis, and advanced disease stage; mechanistically, FAM84A promoted tumor development by potentiating the epithelial–mesenchymal transition and Wnt/β‐catenin signaling pathways, with its expression negatively regulated by miR-874-3p."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond its roles in cancer, genetic variants located upstream of FAM84A have been linked to salt sensitivity of blood pressure, suggesting that the gene may also impact cardiovascular regulatory mechanisms."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Its regulation by microRNAs is further evidenced in studies in the reproductive system where, for example, negative regulation by miR-215 in chicken testicular tissue correlates with differences in sperm motility, implicating FAM84A in spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Additional investigations have identified FAM84A as part of biomarker panels for infectious and inflammatory conditions. In bovine paratuberculosis, for instance, FAM84A is overexpressed in diffuse lesions, suggesting a potential role in modulating cell migration within inflamed tissues."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Variations in DNA methylation at the FAM84A locus during early postnatal life have also been associated with trajectories in body mass index, positing FAM84A as a candidate mediator linking early nutritional exposures (such as exclusive breastfeeding) to later metabolic outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Moreover, FAM84A has been identified as a novel autoantigen in inflammatory bowel disease, suggesting that aberrant immune recognition of this protein might contribute to disease pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore a multifaceted role for FAM84A in regulating cell motility and invasion, modulating signaling pathways, and potentially influencing immune as well as metabolic responses. Whether acting as a facilitator of tumor progression or serving as an informative biomarker in non-neoplastic conditions, FAM84A emerges as a promising molecular target for future diagnostic and therapeutic strategies.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Takaaki Kobayashi, Tadahiko Masaki, Masanori Sugiyama, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A gene encoding a family with sequence similarity 84, member A (FAM84A) enhanced migration of human colon cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Oncol (2006)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16820875"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16820875"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hiroki Kamino, Yuichi Yamazaki, Kosuke Saito, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The direct miR-874-3p-target FAM84A promotes tumor development in papillary thyroid cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/1878-0261.12941"}], "href": "https://doi.org/10.1002/1878-0261.12941"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33751775"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33751775"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hao Mei, Dongfeng Gu, James E Hixson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide linkage and positional association study of blood pressure response to dietary sodium intervention: the GenSalt Study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Epidemiol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/aje/kws290"}], "href": "https://doi.org/10.1093/aje/kws290"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22865701"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22865701"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kai Xing, Mengjin Gao, Xue Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An integrated analysis of testis miRNA and mRNA transcriptome reveals important functional miRNA-targets in reproduction traits of roosters."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Reprod Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.repbio.2020.03.003"}], "href": "https://doi.org/10.1016/j.repbio.2020.03.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32561231"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32561231"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Cristina Blanco Vázquez, Marta Alonso-Hearn, Ramón A Juste, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Detection of latent forms of Mycobacterium avium subsp. paratuberculosis infection using host biomarker-based ELISAs greatly improves paratuberculosis diagnostic sensitivity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0236336"}], "href": "https://doi.org/10.1371/journal.pone.0236336"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32881863"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32881863"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Laurent Briollais, Denis Rustand, Catherine Allard, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA methylation mediates the association between breastfeeding and early-life growth trajectories."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Epigenetics (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13148-021-01209-z"}], "href": "https://doi.org/10.1186/s13148-021-01209-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34937578"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34937578"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Nathalie Vermeulen, Katrijn Op de Béeck, Severine Vermeire, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a novel autoantigen in inflammatory bowel disease by protein microarray."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Inflamm Bowel Dis (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ibd.21508"}], "href": "https://doi.org/10.1002/ibd.21508"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21560193"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21560193"}]}]}]}
NCBI Gene ID 151354
API
Download Associations
Predicted Functions View LRATD1's ARCHS4 Predicted Functions.
Co-expressed Genes View LRATD1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LRATD1's ARCHS4 Predicted Functions.

Functional Associations

LRATD1 has 1,541 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 20 datasets.

Click the + buttons to view associations for LRATD1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LRATD1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with LRATD1 gene from the CellMarker Gene-Cell Type Associations dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of LRATD1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with LRATD1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with LRATD1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with LRATD1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of LRATD1 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of LRATD1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with LRATD1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of LRATD1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of LRATD1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of LRATD1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of LRATD1 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of LRATD1 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of LRATD1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of LRATD1 gene from the RummaGEO Gene Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of LRATD1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of LRATD1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of LRATD1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with LRATD1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.