LY6G6F-LY6G6D Gene

Name LY6G6F-LY6G6D readthrough
Description This locus represents naturally occurring readthrough transcription between the neighboring LY6G6F (lymphocyte antigen 6 family member G6F) and LY6G6D (lymphocyte antigen 6 family member G6D) genes on chromosome 6. The readthrough transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Jul 2017]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The LY6G6 gene sub‐cluster, particularly LY6G6F and LY6G6D, belongs to the Ly6/uPAR superfamily characterized by a conserved three‐fingered fold and, in many cases, glycosylphosphatidylinositol anchoring. Functional studies have demonstrated that proteins such as LY6G6D are expressed on the cell surface—preferentially localizing at the leading edges and filopodia—suggesting roles in cell adhesion, migration, and possibly in regulating hematopoietic cell differentiation through specific ligand interactions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the context of oncology, LY6G6D is overexpressed in colorectal cancer tissues compared with normal colon, with prominent expression in microsatellite-stable and MSI‐low tumors. This tumor‐restricted expression has been exploited in the development of novel immunotherapeutics, including T‐cell‐dependent bispecific antibodies that target a membrane‐proximal epitope of LY6G6D and mediate potent antitumor activity both in vitro and in vivo."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Furthermore, LY6G6D (often reported together with LY6G6F) has been validated as part of a cell surface marker panel for colorectal cancer detection and, when incorporated into a multi‐gene signature in circulating cell‐free DNA, as a non‐invasive diagnostic biomarker for diabetic retinopathy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Collectively, these findings highlight that LY6G6F–LY6G6D proteins play multifaceted roles in modulating cell adhesion and migration and are promising candidates as disease markers and therapeutic targets, especially in the treatment and diagnosis of colorectal cancer and related conditions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Meera Mallya, R Duncan Campbell, Begoña Aguado "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of the five novel Ly-6 superfamily members encoded in the MHC, and detection of cells expressing their potential ligands."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Protein Sci (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1110/ps.062242606"}], "href": "https://doi.org/10.1110/ps.062242606"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17008713"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17008713"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Peiyin Wang, Liping L Sun, Robyn Clark, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel Anti-LY6G6D/CD3 T-Cell-Dependent Bispecific Antibody for the Treatment of Colorectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer Ther (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/1535-7163.MCT-21-0599"}], "href": "https://doi.org/10.1158/1535-7163.MCT-21-0599"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35364611"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35364611"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kamini Sewda, Domenico Coppola, Steven Enkemann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cell-surface markers for colon adenoma and adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.7402"}], "href": "https://doi.org/10.18632/oncotarget.7402"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26894861"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26894861"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Liyuan Han, Chang Chen, Xingyu Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alterations of 5-hydroxymethylcytosines in circulating cell-free DNA reflect retinopathy in type 2 diabetes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2020.11.014"}], "href": "https://doi.org/10.1016/j.ygeno.2020.11.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33221518"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33221518"}]}]}]}
NCBI Gene ID 110599563
API
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Predicted Functions View LY6G6F-LY6G6D's ARCHS4 Predicted Functions.
Co-expressed Genes View LY6G6F-LY6G6D's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LY6G6F-LY6G6D's ARCHS4 Predicted Functions.

Functional Associations

LY6G6F-LY6G6D has 165 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for LY6G6F-LY6G6D from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of LY6G6F-LY6G6D gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of LY6G6F-LY6G6D gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of LY6G6F-LY6G6D gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of LY6G6F-LY6G6D gene from the Rummagene Transcription Factor Associations 2026 dataset.
Tabula Sapiens Gene-Cell Associations cell types with high or low expression of LY6G6F-LY6G6D gene relative to other cell types from the Tabula Sapiens Gene-Cell Associations dataset.