LY86-AS1 Gene

Name LY86 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LY86‐AS1 is a long non‐coding RNA whose dysregulated expression appears to be associated with several human disorders. In type 2 diabetes mellitus (T2DM), LY86‐AS1 is consistently down‐regulated in peripheral blood and in circulating cell‐free form, with lower expression levels correlating with higher fasting blood sugar levels. This dysregulation supports its proposed role as a diagnostic biomarker for T2DM and highlights its potential involvement in disease pathogenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the context of autoimmunity, genetic variation within LY86‐AS1 (e.g., the rs12192707 allele) has been associated with reduced RNA levels, which may modulate the autoimmune response in diseases such as pemphigus foliaceus, suggesting that LY86‐AS1 could play a regulatory role within immune‐related pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, its expression is also altered in neurodegenerative conditions; for instance, in Alzheimer’s disease, LY86‐AS1 levels negatively correlate with Braak stages, hinting at an involvement in the progression or modulation of neurodegeneration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, LY86‐AS1 appears to serve as a multifaceted regulator—its altered expression in metabolic, autoimmune, and neurodegenerative disorders underscores its potential as a diagnostic marker and as a key molecule in the modulation of immune and inflammatory responses.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Leyla Saeidi, Hamid Ghaedi, Mirsaber Sadatamini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LY86-AS1 and HCG27_201 expression in type 2 diabetes mellitus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11033-018-4429-8"}], "href": "https://doi.org/10.1007/s11033-018-4429-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30328000"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30328000"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Amany A Saleh, Heba E Kasem, Enas S Zahran, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cell-free long non-coding RNAs (LY86-AS1 & HCG27_201and GAS5) as biomarkers for pre-diabetes and type 2 DM in Egypt."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrep.2020.100770"}], "href": "https://doi.org/10.1016/j.bbrep.2020.100770"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32514472"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32514472"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Faranak Kazerouni, Azadeh Bayani, Farkhondeh Asadi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Type2 diabetes mellitus prediction using data mining algorithms based on the long-noncoding RNAs expression: a comparison of four data mining approaches."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Bioinformatics (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12859-020-03719-8"}], "href": "https://doi.org/10.1186/s12859-020-03719-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32854616"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32854616"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Mohammad Taheri, Reyhane Eghtedarian, Soudeh Ghafouri-Fard, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Non-coding RNAs and type 2 diabetes mellitus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arch Physiol Biochem (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/13813455.2020.1843498"}], "href": "https://doi.org/10.1080/13813455.2020.1843498"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33155514"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33155514"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Amanda Salviano-Silva, Ticiana Della Justina Farias, Valéria Bumiller-Bini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic variability of immune-related lncRNAs: polymorphisms in LINC-PINT and LY86-AS1 are associated with pemphigus foliaceus susceptibility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Dermatol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/exd.14275"}], "href": "https://doi.org/10.1111/exd.14275"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33394553"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33394553"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Mei Cao, Huaqing Li, Jian Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of age- and gender-associated long noncoding RNAs in the human brain with Alzheimer's disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurobiol Aging (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neurobiolaging.2019.05.023"}], "href": "https://doi.org/10.1016/j.neurobiolaging.2019.05.023"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31280115"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31280115"}]}]}]}
Synonyms LY86AS, LY86-AS
NCBI Gene ID 285780
API
Download Associations
Predicted Functions View LY86-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View LY86-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LY86-AS1's ARCHS4 Predicted Functions.

Functional Associations

LY86-AS1 has 670 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 29 datasets.

Click the + buttons to view associations for LY86-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LY86-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LY86-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LY86-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LY86-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LY86-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LY86-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LY86-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
dbGAP Gene-Trait Associations traits associated with LY86-AS1 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LY86-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LY86-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LY86-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LY86-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LY86-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LY86-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LY86-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LY86-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LY86-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LY86-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LY86-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LY86-AS1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with LY86-AS1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LY86-AS1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with LY86-AS1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LY86-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LY86-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of LY86-AS1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LY86-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LY86-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LY86-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.