LYNX1-SLURP2 Gene

Name LYNX1-SLURP2 readthrough
Description This locus represents naturally occurring read-through transcription between the neighboring LYNX1 and SLURP2 genes. The readthrough transcript encodes a fusion protein comprised of sequence sharing identity with each individual gene product. The significance of this read-through transcription and the function of the resulting protein product have not yet been determined. [provided by RefSeq, Sep 2017]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Members of the Ly6/uPAR “three‐finger” protein family—including the secreted SLURP proteins and the glycosylphosphatidylinositol (GPI)‐anchored Lynx proteins—play important neuromodulatory roles by interacting with nicotinic acetylcholine receptors (nAChRs) in both the central nervous system and peripheral tissues. For example, secreted SLURP proteins regulate cell growth, differentiation, and inflammatory responses in epithelial cells by modulating α7‐nAChR signaling via non‐channel “metabotropic” pathways, while Lynx1, predominantly associated with cell membranes, influences nAChR properties by modifying receptor activation, desensitization, and even subunit assembly. (1,2,3,4)"}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the epidermis, keratinocytes normally express both Lynx1 and SLURP2; however, despite reports of a hybrid transcript containing sequences from both genes (termed “LYNX1‐SLURP2”), detailed expression analyses have demonstrated that keratinocytes do not produce the fusion protein but rather express Lynx1 and SLURP2 as separate entities. In these cells the expression of SLURP2 is specifically up‐regulated by interleukin‑22 via STAT3 signaling and is completely suppressed by interferon‑γ, highlighting a cytokine‐dependent mechanism that fine‑tunes nAChR‐mediated regulation of epidermal homeostasis. (5)"}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings illustrate that although Lynx1 and SLURP2 share structural motifs and can both modulate nAChR function, in keratinocytes their actions are executed independently. This segregation likely preserves unique signaling roles in the regulation of cell proliferation, differentiation, and inflammatory responses in the skin as well as in other tissues.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n (1)"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", (2)"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", (3)"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", (4)"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ", (5)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Fabrice Chimienti, Ronald C Hogg, Laure Plantard, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of SLURP-1 as an epidermal neuromodulator explains the clinical phenotype of Mal de Meleda."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddg320"}], "href": "https://doi.org/10.1093/hmg/ddg320"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14506129"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14506129"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Inés Ibañez-Tallon, Julie M Miwa, Hai Long Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel modulation of neuronal nicotinic acetylcholine receptors by association with the endogenous prototoxin lynx1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0896-6273(02)00632-3"}], "href": "https://doi.org/10.1016/s0896-6273(02"}, {"type": "t", "text": "00632-3) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11906696"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11906696"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ekaterina N Lyukmanova, Zakhar O Shenkarev, Mikhail A Shulepko, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NMR structure and action on nicotinic acetylcholine receptors of water-soluble domain of human LYNX1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110.189100"}], "href": "https://doi.org/10.1074/jbc.M110.189100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21252236"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21252236"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "E N Lyukmanova, M A Shulepko, Z O Shenkarev, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Secreted Isoform of Human Lynx1 (SLURP-2): Spatial Structure and Pharmacology of Interactions with Different Types of Acetylcholine Receptors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep30698"}], "href": "https://doi.org/10.1038/srep30698"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27485575"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27485575"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yasuhiro Moriwaki, Kiyoko Takada, Shoutaro Tsuji, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptional regulation of SLURP2, a psoriasis-associated gene, is under control of IL-22 in the skin: A special reference to the nested gene LYNX1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int Immunopharmacol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.intimp.2015.05.030"}], "href": "https://doi.org/10.1016/j.intimp.2015.05.030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26033490"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26033490"}]}]}]}
NCBI Gene ID 111188157
API
Download Associations
Predicted Functions View LYNX1-SLURP2's ARCHS4 Predicted Functions.
Co-expressed Genes View LYNX1-SLURP2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LYNX1-SLURP2's ARCHS4 Predicted Functions.

Functional Associations

LYNX1-SLURP2 has 159 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for LYNX1-SLURP2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of LYNX1-SLURP2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by LYNX1-SLURP2 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LYNX1-SLURP2 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of LYNX1-SLURP2 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of LYNX1-SLURP2 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of LYNX1-SLURP2 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of LYNX1-SLURP2 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.