MACROD2-AS1 Gene

Name MACROD2 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n A novel noncoding RNA, MACROD2‑AS1, was recently implicated in the genetic architecture of autism spectrum disorders through a gene‐based association analysis using a multi–SNP approach. In this study, a variable threshold method, termed the Optimal P–value Threshold Pedigree Disequilibrium Test, was applied to a family–based autism GWAS dataset and identified MACROD2‑AS1 as significantly associated with disease risk."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although its precise biological function remains to be fully elucidated, the association suggests that MACROD2‑AS1 might play a regulatory role in neurodevelopmental processes. This finding adds to the growing body of evidence that noncoding genomic elements can have significant impacts on complex diseases. In parallel, advances in genomic technologies—such as the use of Hi–C for detecting both balanced and unbalanced chromosomal rearrangements in primary tumors"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "and array comparative genomic hybridization for mapping copy number changes affecting noncoding RNAs in colorectal cancers"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "—underscore the critical importance of comprehensive genomic analyses in uncovering the multifaceted roles of noncoding RNAs in human disease.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yi-Ting Wang, Pei-Yuan Sung, Peng-Lin Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A multi-SNP association test for complex diseases incorporating an optimal P-value threshold algorithm in nuclear families."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12864-015-1620-3"}], "href": "https://doi.org/10.1186/s12864-015-1620-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25975968"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25975968"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Louise Harewood, Kamal Kishore, Matthew D Eldridge, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13059-017-1253-8"}], "href": "https://doi.org/10.1186/s13059-017-1253-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28655341"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28655341"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Eleanor J Davison, Patrick S Tarpey, Heike Fiegler, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deletion at chromosome band 20p12.1 in colorectal cancer revealed by high resolution array comparative genomic hybridization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Chromosomes Cancer (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/gcc.20252"}], "href": "https://doi.org/10.1002/gcc.20252"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16110499"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16110499"}]}]}]}
Synonyms NCRNA00186, BA318C17.1
NCBI Gene ID 100379174
API
Download Associations
Predicted Functions View MACROD2-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View MACROD2-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MACROD2-AS1's ARCHS4 Predicted Functions.

Functional Associations

MACROD2-AS1 has 299 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for MACROD2-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MACROD2-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MACROD2-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MACROD2-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MACROD2-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MACROD2-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of MACROD2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of MACROD2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of MACROD2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of MACROD2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of MACROD2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of MACROD2-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MACROD2-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MACROD2-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MACROD2-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MACROD2-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.