MARCHF6 Gene

Name membrane associated ring-CH-type finger 6
Description This gene encodes a member of a family of membrane-associated E3 ubiquitin ligases containing RING-CH-type zinc finger motifs. Ubiquitination of type II deiodinase by the encoded protein is an important regulatory step in thyroid hormone signalling. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jul 2012]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMARCHF6 (also known as TEB4 in humans) is an endoplasmic reticulum‐resident E3 ubiquitin ligase that plays a central role in maintaining cellular homeostasis by targeting key proteins for proteasomal degradation. Early studies established that MARCHF6 controls the turnover of crucial cholesterol biosynthetic enzymes such as squalene monooxygenase (SM) and 3‐hydroxy-3‐methylglutaryl coenzyme A reductase (HMGCR), as well as influencing the ubiquitination status of SM under different metabolic conditions including unsaturated fatty acid exposure. Structural analyses comparing yeast Doa10 with its human ortholog further revealed a conserved membrane topology and a critical C-terminal element that governs substrate recognition."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its classical role in sterol regulation, MARCHF6 is implicated in broader protein quality control processes. It cooperates with other ER-resident ubiquitin ligases to manage the degradation of misfolded or damaged proteins such as the soluble mCherry-CL1 reporter and the tail-anchored heme oxygenase-1 (HO-1). MARCHF6-dependent ER-associated degradation also modulates the turnover of mutant forms of NPC1—illustrating its importance in pathological conditions like Niemann–Pick type C disease—and is tightly regulated by cholesterol levels, as cholesterol can stabilize MARCHF6 by preventing its autoubiquitination. Additional studies have identified MARCHF6 as a multifaceted regulator that orchestrates the degradation of further cholesterol synthesis enzymes including squalene epoxidase (SQLE), lanosterol 14α-demethylase (LDM), and 24-dehydrocholesterol reductase, with impacts on endothelial barrier function and angiogenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "11"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nRecent findings have also uncovered roles for MARCHF6 in disease pathogenesis beyond metabolic regulation. In the nervous system, intronic TTTTA/TTTCA repeat expansions in the MARCH6 gene underlie a form of Familial Adult Myoclonic Epilepsy (FAME3), while in cancers, alterations in MARCHF6 expression can influence tumor development. In prostate cancer, transcriptional upregulation of MARCHF6 by Sp1 correlates with enhanced cholesterol accretion, whereas in papillary thyroid carcinoma, increased MARCHF6 expression promotes tumorigenesis through destabilization of substrates such as DHX9 and activation of the AKT/mTOR pathway."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "12", "end_ref": "14"}]}, {"type": "t", "text": "\n"}]}]}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Stefan G Kreft, Lin Wang, Mark Hochstrasser "}, {"type": "b", "children": [{"type": "t", "text": "Membrane topology of the yeast endoplasmic reticulum-localized ubiquitin ligase Doa10 and comparison with its human ortholog TEB4 (MARCH-VI)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M512215200"}], "href": "https://doi.org/10.1074/jbc.M512215200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16373356"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16373356"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Noam Zelcer, Laura J Sharpe, Anke Loregger, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The E3 ubiquitin ligase MARCH6 degrades squalene monooxygenase and affects 3-hydroxy-3-methyl-glutaryl coenzyme A reductase and the cholesterol synthesis pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01140-13"}], "href": "https://doi.org/10.1128/MCB.01140-13"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24449766"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24449766"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Julian Stevenson, Winnie Luu, Ika Kristiana, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Squalene mono-oxygenase, a key enzyme in cholesterol synthesis, is stabilized by unsaturated fatty acids."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BJ20131404"}], "href": "https://doi.org/10.1042/BJ20131404"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24840124"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24840124"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Dimitrios Zattas, Jason M Berk, Stefan G Kreft, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Conserved C-terminal Element in the Yeast Doa10 and Human MARCH6 Ubiquitin Ligases Required for Selective Substrate Degradation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M116.726877"}], "href": "https://doi.org/10.1074/jbc.M116.726877"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27068744"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27068744"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Sandra Stefanovic-Barrett, Anna S Dickson, Stephen P Burr, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MARCH6 and TRC8 facilitate the quality control of cytosolic and tail-anchored proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15252/embr.201745603"}], "href": "https://doi.org/10.15252/embr.201745603"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29519897"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29519897"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Mark L Schultz, Kelsey L Krus, Susmita Kaushik, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Coordinate regulation of mutant NPC1 degradation by selective ER autophagy and MARCH6-dependent ERAD."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-018-06115-2"}], "href": "https://doi.org/10.1038/s41467-018-06115-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30202070"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30202070"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Laura J Sharpe, Vicky Howe, Nicola A Scott, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cholesterol increases protein levels of the E3 ligase MARCH6 and thereby stimulates protein degradation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.RA118.005069"}], "href": "https://doi.org/10.1074/jbc.RA118.005069"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30545937"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30545937"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Josephine M E Tan, Emma C L Cook, Marlene van den Berg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differential use of E2 ubiquitin conjugating enzymes for regulated degradation of the rate-limiting enzymes HMGCR and SQLE in cholesterol biosynthesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Atherosclerosis (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.atherosclerosis.2018.12.008"}], "href": "https://doi.org/10.1016/j.atherosclerosis.2018.12.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30658189"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30658189"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Nicola A Scott, Laura J Sharpe, Isabelle M Capell-Hattam, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The cholesterol synthesis enzyme lanosterol 14α-demethylase is post-translationally regulated by the E3 ubiquitin ligase MARCH6."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BCJ20190647"}], "href": "https://doi.org/10.1042/BCJ20190647"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31904814"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31904814"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Josephine Mathilde Elisabeth Tan, Miesje Maxime van der Stoel, Marlene van den Berg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The MARCH6-SQLE Axis Controls Endothelial Cholesterol Homeostasis and Angiogenic Sprouting."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2020.107944"}], "href": "https://doi.org/10.1016/j.celrep.2020.107944"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32755570"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32755570"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Nicola A Scott, Laura J Sharpe, Andrew J Brown "}, {"type": "b", "children": [{"type": "t", "text": "The E3 ubiquitin ligase MARCHF6 as a metabolic integrator in cholesterol synthesis and beyond."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Mol Cell Biol Lipids (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbalip.2020.158837"}], "href": "https://doi.org/10.1016/j.bbalip.2020.158837"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33049405"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33049405"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Hudson W Coates, Ngee Kiat Chua, Andrew J Brown "}, {"type": "b", "children": [{"type": "t", "text": "Consulting prostate cancer cohort data uncovers transcriptional control: Regulation of the MARCH6 gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Mol Cell Biol Lipids (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbalip.2019.08.006"}], "href": "https://doi.org/10.1016/j.bbalip.2019.08.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31422115"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31422115"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Rahel T Florian, Florian Kraft, Elsa Leitão, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Unstable TTTTA/TTTCA expansions in MARCH6 are associated with Familial Adult Myoclonic Epilepsy type 3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-019-12763-9"}], "href": "https://doi.org/10.1038/s41467-019-12763-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31664039"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31664039"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Jie Sun, Zheng Dong, Zhengyao Chang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MARCH6 promotes hepatocellular carcinoma development through up-regulation of ATF2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-021-08540-x"}], "href": "https://doi.org/10.1186/s12885-021-08540-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34273954"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34273954"}]}]}]}
NCBI Gene ID 10299
API
Download Associations
Predicted Functions View MARCHF6's ARCHS4 Predicted Functions.
Co-expressed Genes View MARCHF6's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MARCHF6's ARCHS4 Predicted Functions.

Functional Associations

MARCHF6 has 6,036 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 42 datasets.

Click the + buttons to view associations for MARCHF6 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of MARCHF6 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of MARCHF6 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CCLE Cell Line Proteomics Cell lines associated with MARCHF6 protein from the CCLE Cell Line Proteomics dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of MARCHF6 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of MARCHF6 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing MARCHF6 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with MARCHF6 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of MARCHF6 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by MARCHF6 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving MARCHF6 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with MARCHF6 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2023 biological processes involving MARCHF6 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving MARCHF6 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing MARCHF6 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing MARCHF6 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by MARCHF6 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by MARCHF6 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of MARCHF6 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of MARCHF6 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of MARCHF6 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with MARCHF6 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by MARCHF6 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of MARCHF6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of MARCHF6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving MARCHF6 protein from the KEGG Pathways 2026 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of MARCHF6 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of MARCHF6 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by MARCHF6 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
PFOCR Pathway Figure Associations 2023 pathways involving MARCHF6 protein from the PFOCR Pathway Figure Associations 2023 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving MARCHF6 protein from the Wikipathways PFOCR 2024 dataset.
Reactome Pathways 2024 pathways involving MARCHF6 protein from the Reactome Pathways 2024 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of MARCHF6 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of MARCHF6 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of MARCHF6 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of MARCHF6 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of MARCHF6 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of MARCHF6 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of MARCHF6 gene from the Sci-Plex Drug Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of MARCHF6 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of MARCHF6 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of MARCHF6 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with MARCHF6 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.