MCM3AP-AS1 Gene

Name MCM3AP antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMCM3AP‐AS1 is a long non‐coding RNA that has emerged as a critical regulator in cancer biology. Numerous studies have demonstrated its oncogenic functions by acting as a competitive endogenous RNA (ceRNA) to modulate key molecular pathways. For example, in glioblastoma, hepatocellular carcinoma, papillary thyroid cancer, and pancreatic cancer, MCM3AP‐AS1 has been implicated in promoting cell proliferation, migration, invasion, and metastasis by sponging specific microRNAs and thereby upregulating oncogenic targets. In breast cancer, it drives malignant progression through the miR‐28‐5p/CENPF axis and is clinically correlated with disease aggressiveness, while in oral squamous cell carcinoma, MCM3AP‐AS1 sequesters miR‐204–5p to enhance FOXC1 expression. Its oncogenic roles have also been explored in colorectal, prostate, endometrioid, and lung cancers (acting via regulators such as miR‐195–5p/E2F3 and via downregulation of tumor‐suppressive RNAs like MEG3), and comprehensive reviews further consolidate its contributions to tumorigenesis, angiogenesis (including via extracellular vesicle‐mediated transfer in cervical cancer), and its potential as a prognostic biomarker and therapeutic target."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "23"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its roles in malignancy, MCM3AP‐AS1 is also involved in non‐cancerous pathologies. In osteoarthritis, altered expression of MCM3AP‐AS1 contributes to the regulation of chondrocyte viability, migration, and inflammatory responses – in part through its interactions with microRNAs such as miR‐142–3p and miR‐138–5p, which in turn modulate targets like SIRT1. Similarly, during osteogenic differentiation of dental pulp stem cells, MCM3AP‐AS1 facilitates the upregulation of key osteogenic markers through a miR‐143–3p/IGFBP5 axis. Moreover, in atherosclerosis, reduced levels of this lncRNA have been linked to enhanced proliferation of aortic smooth muscle cells via sponging of miR‐448 and subsequent regulation of MEF2‐C."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "24", "end_ref": "28"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yuze Cao, Peng Wang, Shangwei Ning, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Overexpression of long noncoding RNA MCM3AP-AS1 promotes osteogenic differentiation of dental pulp stem cells via miR-143-3p/IGFBP5 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Cell (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13577-021-00648-3"}], "href": "https://doi.org/10.1007/s13577-021-00648-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34822133"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34822133"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Fei Xu, Qun-Fang Hu, Jia Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SOX4-activated lncRNA MCM3AP-AS1 aggravates osteoarthritis progression by modulating miR-149-5p/Notch1 signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cytokine (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cyto.2022.155805"}], "href": "https://doi.org/10.1016/j.cyto.2022.155805"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35202986"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35202986"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "Shiping Liu, Xiaoyi Qin "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA MCM3AP-AS1 is downregulated in atherosclerosis and sponges miR-448 to suppress vascular smooth muscle cell proliferation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Medicine (Baltimore) (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/MD.0000000000033731"}], "href": "https://doi.org/10.1097/MD.0000000000033731"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37266599"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37266599"}]}]}]}
Synonyms C21ORF85, MCM3APAS, MCM3APASB, MCM3AP-AS, NCRNA00031
NCBI Gene ID 114044
API
Download Associations
Predicted Functions View MCM3AP-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View MCM3AP-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MCM3AP-AS1's ARCHS4 Predicted Functions.

Functional Associations

MCM3AP-AS1 has 3,087 functional associations with biological entities spanning 7 categories (molecular profile, organism, chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 40 datasets.

Click the + buttons to view associations for MCM3AP-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of MCM3AP-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of MCM3AP-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of MCM3AP-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of MCM3AP-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
BioGPS Cell Line Gene Expression Profiles cell lines with high or low expression of MCM3AP-AS1 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of MCM3AP-AS1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MCM3AP-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of MCM3AP-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CCLE Cell Line Gene Mutation Profiles cell lines with MCM3AP-AS1 gene mutations from the CCLE Cell Line Gene Mutation Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with MCM3AP-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MCM3AP-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of MCM3AP-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
CMAP Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of MCM3AP-AS1 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MCM3AP-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
CTD Gene-Chemical Interactions chemicals interacting with MCM3AP-AS1 gene/protein from the curated CTD Gene-Chemical Interactions dataset.
CTD Gene-Disease Associations diseases associated with MCM3AP-AS1 gene/protein from the curated CTD Gene-Disease Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MCM3AP-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MCM3AP-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MCM3AP-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GDSC Cell Line Gene Expression Profiles cell lines with high or low expression of MCM3AP-AS1 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing MCM3AP-AS1 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of MCM3AP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of MCM3AP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of MCM3AP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of MCM3AP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of MCM3AP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of MCM3AP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of MCM3AP-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of MCM3AP-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MCM3AP-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MCM3AP-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of MCM3AP-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of MCM3AP-AS1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of MCM3AP-AS1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of MCM3AP-AS1 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MCM3AP-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations gene perturbations changing expression of MCM3AP-AS1 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of MCM3AP-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MCM3AP-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of MCM3AP-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.