| HGNC Family | Non-coding RNAs |
| Name | mir-100-let-7a-2 cluster host gene |
| Description | This gene produces long non-coding RNAs that act as regulators of cell proliferation. Alternative promoter usage and splicing results in multiple transcript variants. Some transcript variants may promote growth, while others may act to negatively regulate cell division. [provided by RefSeq, May 2016] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMIR100HG is a long non‐coding RNA that serves as a host gene for several microRNAs—including miR‑100, miR‑125b, and let‑7a—yet it also functions independently to regulate key cellular processes. Although its role as the precursor for these miRNAs was noted early on, its own transcript‐mediated activities remain multifaceted. In neuronal contexts, for example, the related linc‐NeD125 regulates cell proliferation and resistance to apoptosis, while broader studies have linked MIR100HG with the modulation of cell proliferation, apoptosis, cell cycle progression and differentiation through its associations with major signaling pathways such as TGF‑β, Wnt, Hippo, and ERK/MAPK."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn several solid tumors, MIR100HG acts as an oncogene. In triple‑negative breast cancer, its overexpression promotes cell proliferation by regulating p27 and forming RNA–DNA triplexes, while in osteosarcoma and gastric cancer high MIR100HG levels correlate with increased tumor cell proliferation, invasion and poor patient prognosis. Similarly, in lung cancer and nasopharyngeal carcinoma, MIR100HG facilitates proliferation and metastasis through axes involving miR‑5590‑3p/DCBLD2 and miR‑136‑5p/IL‑6, respectively."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMIR100HG is also intricately involved in the regulation of the cell cycle and epithelial‐to‐mesenchymal transition. In pancreatic ductal adenocarcinoma, TGF‑β induces its transcription via SMAD2/3, thereby coordinating the expression of its embedded microRNAs—specifically, the pro‑tumorigenic miR‑100 and miR‑125b, while concurrently leaving anti‑tumorigenic let‑7a levels unchanged due to LIN28B‐mediated processing inhibition. Moreover, independent of its miRNAs, a stable, spliced nuclear isoform of MIR100HG modulates cell cycle progression by facilitating the interaction between the RNA binding protein HuR and its target mRNAs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn colorectal carcinoma, MIR100HG is subject to transcriptional repression by β‑catenin. Here, reduced MIR100HG levels correlate with decreased histone H3K27 acetylation on its promoter via HDAC6 recruitment. Functionally, overexpressing MIR100HG induces G0‑G1 arrest through upregulation of the cell cycle inhibitor p57, suggesting a context‑dependent, tumor‑suppressive role, although its overall contributions to cetuximab resistance remain to be fully elucidated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Stephan Emmrich, Alexandra Streltsov, Franziska Schmidt, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1476-4598-13-171"}], "href": "https://doi.org/10.1186/1476-4598-13-171"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25027842"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25027842"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Valeria Bevilacqua, Ubaldo Gioia, Valerio Di Carlo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of linc-NeD125, a novel long non coding RNA that hosts miR-125b-1 and negatively controls proliferation of human neuroblastoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15476286.2015.1096488"}], "href": "https://doi.org/10.1080/15476286.2015.1096488"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26480000"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26480000"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Soudeh Ghafouri-Fard, Atefeh Harsij, Hossein Farahzadi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A concise review on the role of MIR100HG in human disorders."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.17875"}], "href": "https://doi.org/10.1111/jcmm.17875"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37487022"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37487022"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Shaowei Wang, Hao Ke, Honglei Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA MIR100HG promotes cell proliferation in triple-negative breast cancer through triplex formation with p27 loci."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-018-0869-2"}], "href": "https://doi.org/10.1038/s41419-018-0869-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30042378"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30042378"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xiaochuan Su, Junyan Teng, Guoguo Jin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ELK1-induced upregulation of long non-coding RNA MIR100HG predicts poor prognosis and promotes the progression of osteosarcoma by epigenetically silencing LATS1 and LATS2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2018.10.029"}], "href": "https://doi.org/10.1016/j.biopha.2018.10.029"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30551532"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30551532"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jun Li, Qingfeng Xu, Wen Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MIR100HG: a credible prognostic biomarker and an oncogenic lncRNA in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biosci Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BSR20190171"}], "href": "https://doi.org/10.1042/BSR20190171"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30886062"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30886062"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xiaoyan Huang, Huaping Zhong, Yunxiang Cai "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA MIR100HG Promotes Cell Proliferation in Nasopharyngeal Carcinoma by Targeting miR-136-5p/IL-6 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biotechnol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12033-023-01028-y"}], "href": "https://doi.org/10.1007/s12033-023-01028-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38278928"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38278928"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Shengping Min, Linxiang Zhang, Li Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA MIR100HG affects the proliferation and metastasis of lung cancer cells through mediating the microRNA-5590-3p/DCBLD2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immun Inflamm Dis (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/iid3.1223"}], "href": "https://doi.org/10.1002/iid3.1223"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38602284"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38602284"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Silvia Ottaviani, Justin Stebbing, Adam E Frampton, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Interaction of lncRNA MIR100HG with hnRNPA2B1 facilitates m"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "6"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": "A-dependent stabilization of TCF7L2 mRNA and colorectal cancer progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12943-022-01555-3"}], "href": "https://doi.org/10.1186/s12943-022-01555-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35279145"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35279145"}]}]}]}
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| Synonyms | AGD1, LNCRNA-N2, linc-NeD125 |
| NCBI Gene ID | 399959 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR100HG has 1,049 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 25 datasets.
Click the + buttons to view associations for MIR100HG from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of MIR100HG gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of MIR100HG gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR100HG gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of MIR100HG gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with MIR100HG gene from the CellMarker Gene-Cell Type Associations dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR100HG gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR100HG gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR100HG gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR100HG gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with MIR100HG gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of MIR100HG gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of MIR100HG gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of MIR100HG gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of MIR100HG gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of MIR100HG gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of MIR100HG gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of MIR100HG gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with MIR100HG gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with MIR100HG gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with MIR100HG gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with MIR100HG gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR100HG gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR100HG gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR100HG gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR100HG gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |