MIR1228 Gene

HGNC Family Non-coding RNAs
Name microRNA 1228
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMicroRNA‐1228 is emerging as a multifunctional regulator with diverse roles in both neoplastic and non‐neoplastic contexts. In lung cancer, for example, decreased levels of circRNA hsa_circ_100395 lead to less sequestration of miR‐1228, thereby modulating TCF21 expression and impacting tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In parallel, systematic profiling of circulating microRNAs has identified miR‐1228 as one of the most stable endogenous controls across several cancer types, suggesting it functions as a housekeeping gene in the circulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the tumor microenvironment, miR‐1228 has been implicated in promoting oncogenic properties in multiple malignancies. In osteosarcoma, cancer‐associated fibroblasts (CAFs) package miR‐1228 into exosomes that, when transferred to tumor cells, downregulate the tumor suppressor SCAI and thereby enhance cell migration and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similarly, in breast cancer, up‐regulation of miR‐1228 has been reported to promote cell growth, invasion, and migration by targeting genes such as SCAI and MOAP1"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ", while in HER‐2–positive breast cancer, a competing endogenous RNA (ceRNA) network involving circGFRA1 modulates the miR‐1228–AIFM2 axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In cervical cancer, functional knockdown studies employing ultrasound‐targeted microbubble destruction have further supported an oncogenic role for miR‐1228."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " In hepatocellular carcinoma, beyond a separate line of investigation that characterizes miR‐1228’s function"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ", CAF‐derived extracellular vesicles carrying miR‐1228‐3p promote chemoresistance via targeting PLAC8 and activating the PI3K/AKT pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nConversely, in gastric cancer miR‐1228 appears to act as a tumor suppressor. One study found that down‐regulation of the miR‐1228* strand was associated with increased NF‐κB activity and epithelial–mesenchymal transition, and restoration of its expression suppressed xenograft tumor formation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " In another gastric cancer model, enforced expression of miR‐1228 downregulated macrophage migration inhibitory factor (MIF), resulting in cell cycle arrest and reduced angiogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Additional work has demonstrated that exosomes derived from bone marrow mesenchymal stem cells can deliver miR‐1228 to gastric cancer cells, thereby suppressing MMP‐14 expression and inhibiting tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Moreover, in diabetic nephropathy, reduced miR‐1228‐3p levels in kidney biopsies and urine correlate with fibrosis, underscoring its potential as a noninvasive biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond cancer, miR‐1228 contributes to the regulation of normal cellular processes. In human osteoblasts, treatment with 1,25‐dihydroxyvitamin D coinduces miR‐1228 alongside its host gene LRP1, which in turn posttranscriptionally downregulates BMP2K to mediate differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": " Furthermore, miR‐1228 exhibits anti‐apoptotic properties; its overexpression reduces MOAP1 expression and delays stress‐induced apoptosis, and in alveolar epithelial cells, miR‐1228 overexpression can rescue cells from PM2.5‐induced mitochondrial dysfunction and apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": " In high glucose–damaged human renal proximal tubule cells, emerging data implicate miR‐1228 as a modulator of cellular injury responses"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "17"}]}, {"type": "t", "text": ", and preliminary evidence in colon cancer suggests that miR‐1228 may regulate tumor proliferation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these studies underscore the context‐dependent roles of miR‐1228, functioning either as an oncogene or as a tumor suppressor, and influencing cell survival, migration, invasion, and differentiation. This multifaceted microRNA therefore represents a promising target for therapeutic intervention as well as a potential biomarker for disease diagnosis and prognosis.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Daishi Chen, Wei Ma, Zhaoyang Ke, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CircRNA hsa_circ_100395 regulates miR-1228/TCF21 pathway to inhibit lung cancer progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15384101.2018.1515553"}], "href": "https://doi.org/10.1080/15384101.2018.1515553"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30176158"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30176158"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jie Hu, Zheng Wang, Bo-Yi Liao, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Circulating microRNA-194 and microRNA-1228 Could Predict Colon Cancer Proliferation via Phospho S6 Modulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Gastrointestin Liver Dis (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15403/jgld-2558"}], "href": "https://doi.org/10.15403/jgld-2558"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32919420"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32919420"}]}]}]}
Synonyms HSA-MIR-1228, MIR-1228, MIRN1228
NCBI Gene ID 100302201
API
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Predicted Functions View MIR1228's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR1228's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR1228's ARCHS4 Predicted Functions.

Functional Associations

MIR1228 has 358 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for MIR1228 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR1228 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR1228 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of MIR1228 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR1228 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR1228 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR1228 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR1228 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with MIR1228 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR1228 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR1228 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of MIR1228 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR1228 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR1228 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.