| HGNC Family | Non-coding RNAs |
| Name | microRNA 1289-2 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of abstracts provided focuses extensively on the biology and pathological roles of TDP-43 in neurodegenerative conditions—particularly in amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration. These studies detail how TDP-43 regulates diverse aspects of RNA metabolism, including transcription, alternative splicing, and mRNA transport; how it contributes to mitochondrial dysfunction, neuroinflammation, aberrant phase transitions and protein aggregation; and how its mislocalization or post‐translational modification is linked to neuronal stress and cell loss. In short, the literature paints a complex picture of TDP-43 as a central modulator of neuronal homeostasis (for example, see."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "36"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nImportantly, none of these abstracts mention or characterize MIR1289-2, and thus they do not provide any direct evidence as to its function or role in the molecular and cellular processes associated with TDP-43 regulation, neuroinflammation, mitochondrial dynamics, or other neurodegenerative pathways. Based on this set of studies, no conclusions can be drawn regarding MIR1289-2; its potential impact on RNA metabolism or its interplay with TDP-43 and related proteins remains unaddressed and awaits further investigation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "36"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Emanuele Buratti, Francisco E Baralle "}, {"type": "b", "children": [{"type": "t", "text": "Multiple roles of TDP-43 in gene expression, splicing regulation, and human disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Biosci (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2741/2727"}], "href": "https://doi.org/10.2741/2727"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17981595"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17981595"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yohei Iguchi, Masahisa Katsuno, Jun-Ichi Niwa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TDP-43 depletion induces neuronal cell damage through dysregulation of Rho family GTPases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M109.012195"}], "href": "https://doi.org/10.1074/jbc.M109.012195"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19535326"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19535326"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Lien-Szu Wu, Wei-Cheng Cheng, Shin-Chen Hou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TDP-43, a neuro-pathosignature factor, is essential for early mouse embryogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genesis (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/dvg.20584"}], "href": "https://doi.org/10.1002/dvg.20584"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20014337"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20014337"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chantelle F Sephton, Shannon K Good, Stan Atkin, et al. 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| Synonyms | HSA-MIR-1289-2, MIRN1289-2 |
| NCBI Gene ID | 100302134 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR1289-2 has 242 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.
Click the + buttons to view associations for MIR1289-2 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR1289-2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR1289-2 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MIR1289-2 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR1289-2 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR1289-2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR1289-2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of MIR1289-2 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR1289-2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR1289-2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of MIR1289-2 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR1289-2 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR1289-2 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |