| HGNC Family | Non-coding RNAs |
| Name | microRNA 1538 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent research has characterized LDL receptor‐related protein 9 (LRP9) as a unique transmembrane receptor that does not localize to the plasma membrane but instead cycles between the trans‐Golgi network and endosomal compartments. This intracellular trafficking is governed by critical acidic cluster/dileucine motifs that mediate binding to clathrin adaptor GGA proteins, underscoring a novel mechanism of receptor sorting and signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn a complementary study, the calcium‐binding protein Calnuc was found to interact with LRP9 via its arginine‐rich cytosolic domain. Calnuc’s interaction is essential for maintaining proper LRP9 localization, as its depletion results in mistargeting of LRP9 to late endosomal/lysosomal compartments and enhanced degradation. This finding emphasizes the intricate regulation of receptor trafficking by accessory proteins."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast to these studies on receptor trafficking, recent data have revealed a pivotal role for miR‐1538 in colorectal cancer (CRC). Expression of miR‐1538 is significantly down‐regulated in CRC tissues and cell lines, with its reduced levels correlating with larger tumor size, advanced clinical stage, and poorer prognosis. Functional studies demonstrated that miR‑1538 exerts tumor-suppressive effects by directly targeting the 3′‑UTR of DNMT3A mRNA, thereby decreasing DNMT3A protein levels. This downregulation leads to inhibition of cancer cell proliferation, migration, and invasion, suggesting that miR‑1538 may serve as an important prognostic biomarker and potential therapeutic target in CRC."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rémi Boucher, Heidi Larkin, Julie Brodeur, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Intracellular trafficking of LRP9 is dependent on two acidic cluster/dileucine motifs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Histochem Cell Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00418-008-0436-5"}], "href": "https://doi.org/10.1007/s00418-008-0436-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18461348"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18461348"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Julie Brodeur, Heidi Larkin, Rémi Boucher, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Calnuc binds to LRP9 and affects its endosomal sorting."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Traffic (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1600-0854.2009.00933.x"}], "href": "https://doi.org/10.1111/j.1600-0854.2009.00933.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19497050"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19497050"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiaodong Zhang, Yi Yang, Weiguang Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulation of MiR-1538 promotes proliferation and metastasis of colorectal cancer by targeting DNMT3A."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2022.04.006"}], "href": "https://doi.org/10.1016/j.bbrc.2022.04.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35429679"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35429679"}]}]}]}
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| Synonyms | HSA-MIR-1538, MIRN1538 |
| NCBI Gene ID | 100302119 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR1538 has 1,427 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.
Click the + buttons to view associations for MIR1538 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR1538 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR1538 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MIR1538 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR1538 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR1538 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR1538 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR1538 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR1538 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR1538 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR1538 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR1538 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |