| HGNC Family | Non-coding RNAs |
| Name | microRNA 199a-1 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nmiR‐199a, encoded by MIR199A1, has emerged as a multifunctional regulator in cancer. In multiple carcinomas—including ovarian, osteosarcoma, hepatocellular, thyroid, testicular, head and neck, and breast cancers—both strands (miR‐199a‐3p and miR‐199a‐5p) generally act as tumor suppressors by targeting key oncogenic mediators. Its actions include down‐regulating IKKβ to modulate inflammatory signals, inhibiting mTOR, STAT3, MET, CD44, PODXL, and receptor kinases, and thereby impeding cell proliferation, migration, invasion, and chemoresistance. In many studies restoration of miR‐199a expression led to reduced tumor growth and metastasis while enhancing sensitivity to chemotherapeutic agents."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in oncogenesis, miR‐199a also contributes to normal cellular stress responses and tissue remodeling. It is implicated in processes as diverse as limb and myogenic development, modulation of the endoplasmic reticulum stress response, and the regulation of fibrotic and inflammatory pathways in organs such as the liver, kidney, and lung. In fibroblasts and chondrocytes, altered miR‐199a expression affects apoptosis, differentiation, and extracellular matrix homeostasis, and its altered circulating levels have shown promise as noninvasive biomarkers in conditions including interstitial pulmonary fibrosis, osteoarthritis, and early gastric cancer."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "19", "end_ref": "38"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the regulatory level, miR‐199a expression is tightly controlled by a host of upstream signals and epigenetic mechanisms. Transcription factors such as p53, Egr1, and serum response factor have been shown to modulate miR‐199a levels, while long noncoding RNAs—including SNHG1, ANRIL, and ABHD11‐AS1—as well as competing endogenous RNAs, function as molecular sponges that sequester miR‐199a and relieve suppression of target mRNAs. These regulatory networks not only ensure the fine‐tuning of oncogenic and stress‐responsive pathways (for example, those involving HER2/HER3, DDR1, TFAM, ITGB8, and SLC1A5) but also impact the tumor microenvironment and chemoresistance, highlighting the potential of miR‐199a both as a diagnostic biomarker and as a therapeutic target.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tomoko Sagai, Masaki Hosoya, Youichi Mizushina, et al. 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| Synonyms | MIRN199A1, MIR-199A-1, MIR-199-s |
| NCBI Gene ID | 406976 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR199A1 has 700 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.
Click the + buttons to view associations for MIR199A1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR199A1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR199A1 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MIR199A1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR199A1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR199A1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR199A1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR199A1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with MIR199A1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing MIR199A1 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of MIR199A1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of MIR199A1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR199A1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR199A1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of MIR199A1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR199A1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR199A1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| WikiPathways Pathways 2014 | pathways involving MIR199A1 protein from the Wikipathways Pathways 2014 dataset. | |