MIR2054 Gene

HGNC Family Non-coding RNAs
Name microRNA 2054
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
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Moreover, NEDD9 facilitates key oncogenic signaling cascades mediated by SRC, FAK, and AURKA, which underscores a potential role for the MIR2054–NEDD9 axis as a target for therapeutic intervention in diverse cancers."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn developmental contexts, NEDD9 is crucial for proper embryogenesis and organ formation. It is dynamically regulated by retinoic acid and other transcriptional cues in the neural tube, where it guides neural crest cell delamination, migration, and the maintenance of progenitor cell populations. The precise spatiotemporal expression of NEDD9 governs neurogenesis and the formation of critical structures in the brain and other organs. Thus, by influencing NEDD9 levels, MIR2054 may indirectly determine key cell fate decisions and support coordinated morphogenetic processes during early development."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "12"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in development and oncogenesis, NEDD9 is also a pivotal regulator of immune cell function and cytoskeletal dynamics. It contributes to effective T-cell activation by linking T-cell receptor microclusters to the underlying actin network at the immunological synapse, thereby promoting calcium signaling and integrin-mediated adhesion. In addition, NEDD9 modulates osteoclastogenesis, focal adhesion turnover in migratory fibroblasts, and even ciliary structure in renal epithelia. These findings collectively suggest that the MIR2054–NEDD9 regulatory network is integral not only to cellular motility and adhesion but also to immune responses and tissue homeostasis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "19"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Mahendra K Singh, Eugene Izumchenko, Andres J Klein-Szanto, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The role of Cas-L/NEDD9 as a regulator of collagen-induced arthritis in a murine model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2015.03.156"}], "href": "https://doi.org/10.1016/j.bbrc.2015.03.156"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25847598"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25847598"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Yasunori Omata, Shinya Nakamura, Takuma Koyama, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Actin polymerization-dependent activation of Cas-L promotes immunological synapse stability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunol Cell Biol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/icb.2016.61"}], "href": "https://doi.org/10.1038/icb.2016.61"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27359298"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27359298"}]}]}]}
Synonyms HSA-MIR-2054
NCBI Gene ID 100302267
API
Download Associations
Predicted Functions View MIR2054's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR2054's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR2054's ARCHS4 Predicted Functions.

Functional Associations

MIR2054 has 176 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for MIR2054 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR2054 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR2054 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of MIR2054 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR2054 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR2054 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with MIR2054 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR2054 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR2054 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR2054 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.