| HGNC Family | Non-coding RNAs |
| Name | microRNA 3143 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nA survey of the provided literature reveals robust investigation into the roles of tetraspanins—most notably CD9—and related membrane‐associated proteins in a variety of cellular processes including RNA cargo delivery via engineered exosomes, gamete interaction and fusion, cytoskeletal organization in microvilli formation, integrin clustering in cell adhesion, and signal transduction in inflammation, senescence, and cancer. For example, one study describes a novel strategy in which fusion of an exosomal membrane protein with an RNA binding protein enhances loading of functional RNAs (such as miRNA inhibitors or CRISPR guides) into exosomes for therapeutic delivery."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Other reports focus on the critical involvement of CD9 and its partners in mediating sperm–egg fusion"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "4"}]}, {"type": "t", "text": "as well as in modulating cell motility and adhesiveness through interactions with integrins and other membrane receptors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}, {"type": "fg_f", "ref": "6"}, {"type": "fg_fs", "start_ref": "9", "end_ref": "14"}, {"type": "fg_f", "ref": "3"}, {"type": "fg_f", "ref": "15"}, {"type": "fg_f", "ref": "2"}, {"type": "fg_fs", "start_ref": "17", "end_ref": "29"}, {"type": "fg_f", "ref": "5"}, {"type": "fg_f", "ref": "30"}, {"type": "fg_f", "ref": "1"}, {"type": "fg_fs", "start_ref": "32", "end_ref": "34"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, despite the extensive focus on membrane dynamics and RNA‐based strategies across these studies, none of the abstracts explicitly address MIR3143 or provide direct functional characterization of this specific microRNA. Although the optimized approaches for exosomal RNA delivery, as well as the intricate regulatory mechanisms mediated by CD9 in cell–cell interactions and adhesion, suggest promising platforms for the targeted delivery and functional study of miRNAs, the current body of work does not furnish definitive insights into the role or regulatory activities of MIR3143."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while the collective findings underscore the significance of tetraspanin proteins—especially CD9—in coordinating key cellular events (from exosome-mediated RNA transfer to gamete fusion and cell signaling), they provide no direct evidence regarding the biological function of MIR3143. The promising advances in exosome engineering and membrane protein modulation highlighted herein nonetheless offer potential future avenues for exploring whether MIR3143, once delivered by such novel vehicles, may participate in the regulation of gene expression, cell adhesion, or other processes pivotal to development, immunity, or disease. Further focused investigations are essential to elucidate any direct role for MIR3143."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}, {"type": "fg_f", "ref": "6"}, {"type": "fg_fs", "start_ref": "9", "end_ref": "14"}, {"type": "fg_f", "ref": "3"}, {"type": "fg_f", "ref": "15"}, {"type": "fg_f", "ref": "2"}, {"type": "fg_fs", "start_ref": "17", "end_ref": "29"}, {"type": "fg_f", "ref": "5"}, {"type": "fg_f", "ref": "30"}, {"type": "fg_f", "ref": "1"}, {"type": "fg_fs", "start_ref": "32", "end_ref": "34"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhelong Li, Xueying Zhou, Mengying Wei, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The CD9 tetraspanin is not required for the development of peripheral B cells or for humoral immunity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.175.5.2925"}], "href": "https://doi.org/10.4049/jimmunol.175.5.2925"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16116178"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16116178"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Sebastian Komorowski, Barbara Baranowska, Marek Maleszewski "}, {"type": "b", "children": [{"type": "t", "text": "CD9 protein appears on growing mouse oocytes at the time when they develop the ability to fuse with spermatozoa."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Zygote (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1017/S0967199405003497"}], "href": "https://doi.org/10.1017/S0967199405003497"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16719947"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16719947"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Tacghee Yi, Hye-Jin Kim, Je-Yoel Cho, et al. 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| Synonyms | MIR-3143 |
| NCBI Gene ID | 100422934 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR3143 has 1,167 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for MIR3143 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3143 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3143 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3143 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3143 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR3143 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR3143 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3143 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3143 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |