| HGNC Family | Non-coding RNAs |
| Name | microRNA 3153 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nShroom3 is a key cytoskeletal effector that coordinates epithelial cell shape changes during developmental morphogenesis. In several studies, it has been shown to induce apical constriction by recruiting and organizing actomyosin networks at the apical junctions of epithelial cells—events that are critical for neural tube closure and lens placode invagination. Mechanistically, Shroom3 interacts with ROCK kinases to ensure proper localization of phosphorylated myosin regulatory light chain and F‑actin, thereby generating the contractile forces needed for coordinated cell remodeling."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its fundamental role in epithelial morphogenesis, Shroom3 participates in other developmental processes. It modulates asymmetric cell shape changes in the dorsal mesentery that are essential for gut rotation and works in concert with junctional proteins—such as N‑cadherin—to sustain left/right morphogenetic asymmetries. Furthermore, Shroom3 is integrated into intracellular inhibitory pathways in the central nervous system, where it partners with scaffold proteins like POSH and kinases such as LZK to mediate myelin‐dependent restriction of axon outgrowth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in epithelial and neural morphogenesis, Shroom3 also contributes to the proper development and function of other organs. It functions downstream of the planar cell polarity pathway to influence cardiomyocyte polarity and organization, with its deficiency leading to congenital heart defects. In the kidney, Shroom3 is essential for maintaining podocyte architecture and the integrity of the slit diaphragm, and genetic variants in SHROOM3 are associated with chronic kidney disease and adverse transplant outcomes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jeffrey D Hildebrand "}, {"type": "b", "children": [{"type": "t", "text": "Shroom regulates epithelial cell shape via the apical positioning of an actomyosin network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.02626"}], "href": "https://doi.org/10.1242/jcs.02626"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16249236"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16249236"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Tamako Nishimura, Masatoshi Takeichi "}, {"type": "b", "children": [{"type": "t", "text": "Shroom3-mediated recruitment of Rho kinases to the apical cell junctions regulates epithelial and neuroepithelial planar remodeling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.019646"}], "href": "https://doi.org/10.1242/dev.019646"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18339671"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18339671"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Timothy F Plageman, Mei-I Chung, Ming Lou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pax6-dependent Shroom3 expression regulates apical constriction during lens placode invagination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.045369"}], "href": "https://doi.org/10.1242/dev.045369"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20081189"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20081189"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chih-Wen Chu, Emma Gerstenzang, Olga Ossipova, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lulu regulates Shroom-induced apical constriction during neural tube closure."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0081854"}], "href": "https://doi.org/10.1371/journal.pone.0081854"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24282618"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24282618"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Richard A Lang, Ken Herman, Albert B Reynolds, et al. "}, {"type": "b", "children": [{"type": "t", "text": "p120-catenin-dependent junctional recruitment of Shroom3 is required for apical constriction during lens pit morphogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.107433"}], "href": "https://doi.org/10.1242/dev.107433"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25038041"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25038041"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Heather M Dickson, Jonathan Zurawski, Huanqing Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "POSH is an intracellular signal transducer for the axon outgrowth inhibitor Nogo66."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.1324-10.2010"}], "href": "https://doi.org/10.1523/JNEUROSCI.1324-10.2010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20926658"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20926658"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Timothy F Plageman, Amanda L Zacharias, Phillip J Gage, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Shroom3 and a Pitx2-N-cadherin pathway function cooperatively to generate asymmetric cell shape changes during gut morphogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2011.06.027"}], "href": "https://doi.org/10.1016/j.ydbio.2011.06.027"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21726547"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21726547"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Matthew D Durbin, James O'Kane, Samuel Lorentz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SHROOM3 is downstream of the planar cell polarity pathway and loss-of-function results in congenital heart defects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2020.05.013"}], "href": "https://doi.org/10.1016/j.ydbio.2020.05.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32511952"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32511952"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Ryo Matsuura, Atsuko Hiraishi, Lawrence B Holzman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SHROOM3, the gene associated with chronic kidney disease, affects the podocyte structure."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-020-77952-9"}], "href": "https://doi.org/10.1038/s41598-020-77952-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33273487"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33273487"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Aihua Li, Joanna Cunanan, Hadiseh Khalili, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Shroom3, a Gene Associated with CKD, Modulates Epithelial Recovery after AKI."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Kidney360 (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.34067/KID.0003802021"}], "href": "https://doi.org/10.34067/KID.0003802021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35368578"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35368578"}]}]}]}
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| Synonyms | MIR-3153 |
| NCBI Gene ID | 100422936 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR3153 has 1,285 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.
Click the + buttons to view associations for MIR3153 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3153 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3153 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3153 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR3153 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of MIR3153 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR3153 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3153 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of MIR3153 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR3153 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3153 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |