| HGNC Family | Non-coding RNAs |
| Name | microRNA 3169 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of studies provided demonstrates a recurring theme whereby key protein tyrosine phosphatases—most prominently the T‐cell protein tyrosine phosphatase (TCPTP), encoded by PTPN2—play critical roles in maintaining proper signaling thresholds. By dephosphorylating substrates such as Src family kinases, specific receptor tyrosine kinases, and STAT proteins, these phosphatases ensure that T‐cell receptor, cytokine, growth factor, and insulin signaling are tightly regulated. This regulation is vital for preventing aberrant cell activation that can lead to autoimmunity, uncontrolled proliferation in cancer, or metabolic dysregulation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, however, none of the abstracts in this collection specifically address or elucidate a direct function for MIR3169. While these investigations explore diverse aspects of phosphatase-mediated signal attenuation—in contexts ranging from T cell homeostasis and antigen cross‐presentation to insulin receptor and epidermal growth factor receptor signaling—there is no experimental evidence given regarding MIR3169. In many cases, microRNAs are recognized as post‐transcriptional regulators that fine‐tune protein expression; thus, it remains conceivable that MIR3169 could influence these pathways indirectly (for example, by targeting transcripts encoding phosphatases or associated signaling mediators), yet no such role is described in the present literature."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, the body of work emphasizes the importance of phosphatase-mediated negative regulation in several disease-relevant signaling cascades, yet it does not report any direct observations or functional insights regarding MIR3169. The absence of such information means that while MIR3169 might be hypothesized to play a modulatory role—potentially by impacting messenger RNA stability or translation of key regulators like TCPTP—its precise function remains to be delineated in future focused studies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "34"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lars Fogh Iversen, Karin Bach Moller, Anja K Pedersen, et al. 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| NCBI Gene ID | 100422973 |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR3169 has 182 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.
Click the + buttons to view associations for MIR3169 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3169 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3169 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3169 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3169 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR3169 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR3169 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3169 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR3169 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3169 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |