MIR3180-2 Gene

HGNC Family Non-coding RNAs
Name microRNA 3180-2
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSeveral studies have underscored the crucial role of connexin gap junction channels, particularly Cx46 and Cx50, in regulating ocular lens development, homeostasis, and differentiation. For instance, targeted deletion and replacement experiments have revealed that specific intrinsic properties of individual connexins are needed to support proper cellular growth and maintain lens transparency."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": " In this context, emerging evidence on microRNAs suggests that MIR3180-2 may act as a fine-tuner of such processes, potentially by modulating the expression levels or post‐translational modifications of these connexin proteins, thereby influencing intercellular communication during lens differentiation."}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther investigations have detailed how connexin-mediated transport mechanisms—including the diffusion of antioxidants like glutathione and the regulation of basal sodium leak conductance—are essential to maintaining the lens’s redox balance and ionic homeostasis. Studies using connexin knockout models have shown that alterations in gap junction plaque assembly, channel permeability, and interactions with the cytoskeleton can contribute to cataract formation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "10"}]}, {"type": "t", "text": " Given that microRNAs are key regulators of gene expression, MIR3180-2 could be involved in governing these connexin-dependent pathways, altering connexin turnover or influencing channel assembly and function under both normal and stress conditions."}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond the lens, connexin proteins also play roles in other tissues such as the kidney and testis where intercellular communication is vital for homeostatic regulation and synchronized cell activities. Complementary studies have linked connexin expression and phosphorylation patterns with tissue differentiation and barrier function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "11", "end_ref": "14"}]}, {"type": "t", "text": " Although none of these works directly examined MIR3180-2, they collectively provide a framework from which one may hypothesize that MIR3180-2 serves as an important regulatory element. By targeting connexin transcripts or influencing signaling cascades that affect gap junction formation, MIR3180-2 could contribute to the fine-tuning of tissue homeostasis, differentiation, and stress responses in the lens and beyond."}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Thomas W White "}, {"type": "b", "children": [{"type": "t", "text": "Unique and redundant connexin contributions to lens development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1067582"}], "href": "https://doi.org/10.1126/science.1067582"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11786642"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11786642"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Nefeli Slavi, Clio Rubinos, Leping Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Connexin 46 (cx46) gap junctions provide a pathway for the delivery of glutathione to the lens nucleus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M114.597898"}], "href": "https://doi.org/10.1074/jbc.M114.597898"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25294879"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25294879"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Irene Dunia, Christian Cibert, Xiaohua Gong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural and immunocytochemical alterations in eye lens fiber cells from Cx46 and Cx50 knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Cell Biol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejcb.2006.03.006"}], "href": "https://doi.org/10.1016/j.ejcb.2006.03.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16740340"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16740340"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Quan V Hoang, Haohua Qian, Harris Ripps "}, {"type": "b", "children": [{"type": "t", "text": "Functional analysis of hemichannels and gap-junctional channels formed by connexins 43 and 46."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Vis (2010)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20664797"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20664797"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Rupalatha Maddala, Tharkika Nagendran, Gustaaf G de Ridder, et al. "}, {"type": "b", "children": [{"type": "t", "text": "L-type calcium channels play a critical role in maintaining lens transparency by regulating phosphorylation of aquaporin-0 and myosin light chain and expression of connexins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0064676"}], "href": "https://doi.org/10.1371/journal.pone.0064676"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23734214"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23734214"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Catherine Cheng, Roberta B Nowak, Junyuan Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lens ion homeostasis relies on the assembly and/or stability of large connexin 46 gap junction plaques on the broad sides of differentiating fiber cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Cell Physiol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpcell.00372.2014"}], "href": "https://doi.org/10.1152/ajpcell.00372.2014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25740157"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25740157"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Lisa Ebihara, Yegor Korzyukov, Sorabh Kothari, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cx46 hemichannels contribute to the sodium leak conductance in lens fiber cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Cell Physiol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpcell.00353.2013"}], "href": "https://doi.org/10.1152/ajpcell.00353.2013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24380846"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24380846"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Viviana M Berthoud, Peter J Minogue, Helena Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Connexin46fs380 causes progressive cataracts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.14-15012"}], "href": "https://doi.org/10.1167/iovs.14-15012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25103261"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25103261"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "R-Marc Pelletier, Casimir D Akpovi, Li Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Complementary expression and phosphorylation of Cx46 and Cx50 during development and following gene deletion in mouse and in normal and orchitic mink testes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Regul Integr Comp Physiol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpregu.00152.2015"}], "href": "https://doi.org/10.1152/ajpregu.00152.2015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26017495"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26017495"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Oscar Jara, Peter J Minogue, Viviana M Berthoud, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Do Connexin Mutants Cause Cataracts by Perturbing Glutathione Levels and Redox Metabolism in the Lens?"}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomolecules (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/biom10101418"}], "href": "https://doi.org/10.3390/biom10101418"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33036381"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33036381"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Shengwen Li, Koichiro Nomata, Tomayoshi Hayashi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transient decrease in gap junction expression during compensatory renal growth in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Urology (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0090-4295(02)01837-x"}], "href": "https://doi.org/10.1016/s0090-4295(02"}, {"type": "t", "text": "01837-x) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12385951"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12385951"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Yajun Tang, Thomas E Crowley, Nalin M Kumar "}, {"type": "b", "children": [{"type": "t", "text": "Global gene expression analysis of lenses from different mouse strains and in the alpha3Cx46 knockout mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Vis (2010)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20104256"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20104256"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Oscar Jara, Peter J Minogue, Viviana M Berthoud, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Levels and Modifications of Both Lens Fiber Cell Connexins Are Affected in Connexin Mutant Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cells (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/cells11182786"}], "href": "https://doi.org/10.3390/cells11182786"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36139360"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36139360"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Jennifer Pineros, Xiaoxia Zhu, Bo Ding, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Connexins 30 and 43 expression changes in relation to age-related hearing loss."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hear Res (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.heares.2024.108971"}], "href": "https://doi.org/10.1016/j.heares.2024.108971"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38359484"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38359484"}]}]}]}
Synonyms MIR-3180-2
NCBI Gene ID 100422956
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Predicted Functions View MIR3180-2's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR3180-2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR3180-2's ARCHS4 Predicted Functions.

Functional Associations

MIR3180-2 has 421 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for MIR3180-2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR3180-2 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3180-2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR3180-2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR3180-2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR3180-2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.