| HGNC Family | Non-coding RNAs |
| Name | MIR31 host gene |
| Description | This gene produces a long non-coding RNA that acts as a host gene for miR-31. This transcript may be involved in cellular pluripotency and regulate the differentiation of myoblasts and other tissues. This RNA was found to interact with Polycomb repressive proteins to repression transcription of genes involves in cell senescence. [provided by RefSeq, Dec 2017] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMIR31HG is a multifunctional long noncoding RNA that plays prominent oncogenic roles in a wide spectrum of malignancies. In several cancer types—including oral carcinoma, pancreatic ductal adenocarcinoma, head and neck squamous cell carcinoma, lung adenocarcinoma, chordoma, gastric cancer, non‐small cell lung cancer, esophageal and cervical squamous cell carcinomas, malignant melanoma, and breast and thyroid cancers—MIR31HG is frequently deregulated. Many studies have shown that its aberrant expression contributes to tumor progression by acting as a co‐activator of hypoxia‐inducible factor signaling, by sponging diverse microRNAs (for example, miR‑193b, miR‑214, and miR‑361‑3p) and thereby modulating downstream effectors (such as HIF‑1α, p300, c‑Met, EMP1, RIPK4, and LBH) to promote cell proliferation, cell cycle progression, invasion, metastasis, and epithelial–mesenchymal transition. In several instances, elevated MIR31HG expression is also significantly associated with poor clinical outcome and serves as an independent prognostic predictor in these cancers."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "22"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its role in oncogenesis, MIR31HG is critically involved in several non‐malignant processes and developmental conditions. It can negatively regulate osteogenic differentiation by interacting with the NF‑κB pathway and modulate inflammatory inhibition of bone formation, while conversely promoting adipocyte lineage commitment through epigenetic regulation of key adipogenic genes such as FABP4. Moreover, MIR31HG has been implicated in early developmental disorders – for example, influencing cell migration and proliferation in Hirschsprung’s disease and nonsyndromic cleft lip with or without cleft palate – and it also participates in the regulation of the senescence‐associated secretory phenotype via modulation of YBX1 phosphorylation. Inflammatory and autoimmune conditions, including rheumatoid arthritis and systemic lupus erythematosus, have further been linked to altered MIR31HG expression."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "23", "end_ref": "28"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nGenetic variations in MIR31HG further contribute to disease susceptibility and clinical behavior. Specific polymorphisms have been associated with risks for conditions such as lumbar disc herniation, steroid‐induced or alcoholic osteonecrosis of the femoral head, and IgA nephropathy, while meta‐analyses indicate that context‐dependent differences in MIR31HG expression may serve as valuable prognostic biomarkers. Collectively, these findings underscore the multifaceted regulatory mechanisms of MIR31HG, which—through transcriptional co-activation, microRNA sponging, and epigenetic modifications—drive diverse cellular pathways that influence both malignant progression and non‐malignant developmental or inflammatory disorders, thereby representing a promising target for diagnostic and therapeutic strategies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "29", "end_ref": "34"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jing-Wen Shih, Wei-Fan Chiang, Alexander T H Wu, et al. 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| Synonyms | LncHIFCAR, hsa-lnc-31 |
| NCBI Gene ID | 554202 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR31HG has 962 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.
Click the + buttons to view associations for MIR31HG from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of MIR31HG gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of MIR31HG gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR31HG gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of MIR31HG gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR31HG gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR31HG gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR31HG gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of MIR31HG gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of MIR31HG gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of MIR31HG gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of MIR31HG gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of MIR31HG gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of MIR31HG gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of MIR31HG gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with MIR31HG gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with MIR31HG gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with MIR31HG gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR31HG gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR31HG gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of MIR31HG gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR31HG gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |