MIR346 Gene

HGNC Family Non-coding RNAs
Name microRNA 346
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
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In airway epithelial cells, endoplasmic reticulum stress induces miR‑346 via spliced X‑box–binding protein‑1, leading to downregulation of immune‐related mRNAs such as TAP1 and consequently reduced MHC class I antigen presentation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In rheumatoid arthritis fibroblast‐like synoviocytes, lipopolysaccharide stimulation elevates miR‑346 levels, which indirectly curtail the release of pro‐inflammatory cytokines such as interleukin‑18 and tumor necrosis factor‑α by targeting mediators like Bruton's tyrosine kinase and regulating TTP expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In the neural context, miR‑346 uniquely binds to the 5′‑UTR of amyloid‑β precursor protein mRNA to upregulate its translation, thereby potentially contributing to amyloid‑β peptide production in Alzheimer’s disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n \n \nIn various cancers miR‑346 exerts oncogenic functions by modulating gene expression networks. In cervical cancer cells, it competes with miR‑138 for binding sites on the hTERT 3′‑UTR, and in coordination with GRSF1, it promotes hTERT translation and simultaneously elevates AGO2 expression, thereby enhancing microRNA activity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In nasopharyngeal and hepatocellular carcinomas, overexpressed miR‑346 targets tumor suppressors such as BRMS1 and KLF14 to facilitate cell migration, invasion, proliferation, and resistance to apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Its oncogenic influence is further underscored in renal cell and colorectal carcinomas, where miR‑346 modulates critical signaling pathways—the former by targeting GSK‑3β to activate Wnt/β‑catenin signaling"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ", and the latter by directly repressing FBXL2 and LHX6 to promote G1‑S cell cycle transition and activate Akt/mTOR signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " In non‑small cell lung cancer and glioma, regulatory circular RNAs—circ_0069244 and circ‑TOP2A—function as sponges for miR‑346, thereby modulating downstream targets such as XPC and SUSD2 that govern cell proliferation and migration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " In uveal melanoma, elevated miR‑346 expression correlates with metastatic progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": "\n \n \nBeyond its direct regulatory roles, miR‑346 also shows promise as a diagnostic and prognostic biomarker across a range of clinical conditions. Elevated serum levels of miR‑346 have been detected in patients with Mycobacterium avium complex pulmonary disease and tuberculosis, with concentrations reflecting bacterial load and therapy response."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": " In autoimmune disorders such as Graves’ disease, altered miR‑346 expression in circulating CD4⁺ T cells impacts T follicular helper cell differentiation by targeting Bcl‑6 and serves as a predictor for disease relapse."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "17"}]}, {"type": "t", "text": " Aberrant miR‑346 levels in gestational tissues have been linked to adverse obstetric outcomes, and in sepsis, the MALAT1/miR‑346/SMAD3 regulatory network influences macrophage proliferation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "19"}]}, {"type": "t", "text": " Moreover, conflicting reports regarding miR‑346 expression in breast cancer underscore the complexity of its regulation and necessitate further investigation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "21"}]}, {"type": "t", "text": " In addition, altered miR‑346 expression in primary sclerosing cholangitis associated with ulcerative colitis points to a putative role in modulating carcinogenic pathways in these patients."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "22"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rafal Bartoszewski, Joseph W Brewer, Andras Rab, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Bruton's tyrosine kinase is involved in miR-346-related regulation of IL-18 release by lipopolysaccharide-activated rheumatoid fibroblast-like synoviocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.0801613"}], "href": "https://doi.org/10.4049/jimmunol.0801613"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19342689"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19342689"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Noha Semaan, Laurent Frenzel, Ghada Alsaleh, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "miR-346 and miR-138 competitively regulate hTERT in GRSF1- and AGO2-dependent manners, respectively."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep15793"}], "href": "https://doi.org/10.1038/srep15793"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26507454"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26507454"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Junfei Guo, Jing Lv, Min Liu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Differential miR-346 and miR-582-3p Expression in Association with Selected Maternal and Fetal Complications."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms18071570"}], "href": "https://doi.org/10.3390/ijms18071570"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28753968"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28753968"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Qiuhong Yang, Kaiqi Cao, Guangjun Jin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hsa-miR-346 plays a role in the development of sepsis by downregulating SMAD3 expression and is negatively regulated by lncRNA MALAT1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Probes (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mcp.2019.101444"}], "href": "https://doi.org/10.1016/j.mcp.2019.101444"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31494280"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31494280"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Debomoy K Lahiri, Bryan Maloney, Kumar Sambamurti "}, {"type": "b", "children": [{"type": "t", "text": "When figures and data contradict text: MiR346 is apparently reduced in breast cancer tissue, contrary to claims by a paper's author."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2017.08.011"}], "href": "https://doi.org/10.1016/j.gene.2017.08.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28888578"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28888578"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Agnieszka Kempinska-Podhorodecka, Malgorzata Blatkiewicz, Ewa Wunsch, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Oncomir MicroRNA-346 Is Upregulated in Colons of Patients With Primary Sclerosing Cholangitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Transl Gastroenterol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.14309/ctg.0000000000000112"}], "href": "https://doi.org/10.14309/ctg.0000000000000112"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31972611"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31972611"}]}]}]}
Synonyms HSA-MIR-346, MIRN346, MIR-346, MIRNA346
NCBI Gene ID 442911
API
Download Associations
Predicted Functions View MIR346's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR346's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR346's ARCHS4 Predicted Functions.

Functional Associations

MIR346 has 479 functional associations with biological entities spanning 6 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for MIR346 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR346 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR346 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of MIR346 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
CTD Gene-Disease Associations diseases associated with MIR346 gene/protein from the curated CTD Gene-Disease Associations dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores diseases co-occuring with MIR346 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR346 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR346 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR346 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
ESCAPE Omics Signatures of Genes and Proteins for Stem Cells PubMedIDs of publications reporting gene signatures containing MIR346 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with MIR346 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing MIR346 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of MIR346 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with MIR346 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR346 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR346 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR346 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores tissues co-occuring with MIR346 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.