| HGNC Family | Non-coding RNAs |
| Name | microRNA 3654 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMIR3654 is a member of the microRNA family, a group of short, non‐coding regulatory RNAs that modulate key cellular processes such as proliferation, differentiation, and programmed cell death. As described in one abstract, microRNAs can function as oncogenes or tumor suppressors and are integral to the fine‐tuning of gene expression in various biological contexts, including cancer initiation and progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAlthough the other study primarily focused on the role of Profilin 4 (PFN4) during spermiogenesis—demonstrating that PFN4 is critical for proper manchette organization, acrosome biogenesis, and autophagic flux—such developmental processes are also subject to regulation by microRNAs. While MIR3654 is not explicitly characterized within the PFN4 deficiency study, its inclusion in discussions of microRNA functions suggests that MIR3654, like other members of its family, may contribute to the post‐transcriptional regulation of genes involved in cytoskeletal dynamics, vesicular trafficking, and cellular remodeling essential for spermatid maturation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, even though direct functional evidence for MIR3654’s activity in these studies is not delineated, the general characterization of microRNAs indicates that MIR3654 likely participates in regulatory networks overseeing critical developmental and pathological processes. Its potential to influence cellular events—from gamete formation to tumorigenesis—underscores the importance of further investigations into its specific targets and mechanisms of action.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Subramanian Saravanan, Villianur I H Islam, Krishnaraj Thirugnanasambantham, et al. "}, {"type": "b", "children": [{"type": "t", "text": "In Silico Identification of Human miR 3654 and its Targets Revealed its Involvement in Prostate Cancer Progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Microrna (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/2211536605666160610094230"}], "href": "https://doi.org/10.2174/2211536605666160610094230"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27297584"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27297584"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Naila Umer, Sharang Phadke, Farhad Shakeri, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PFN4 is required for manchette development and acrosome biogenesis during mouse spermiogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.200499"}], "href": "https://doi.org/10.1242/dev.200499"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35950913"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35950913"}]}]}]}
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| NCBI Gene ID | 100500804 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR3654 has 1,082 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for MIR3654 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3654 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3654 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MIR3654 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with MIR3654 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3654 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3654 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR3654 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of MIR3654 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of MIR3654 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of MIR3654 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of MIR3654 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3654 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of MIR3654 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Cell and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of MIR3654 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3654 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| WikiPathways Pathways 2014 | pathways involving MIR3654 protein from the Wikipathways Pathways 2014 dataset. | |