MIR3660 Gene

HGNC Family Non-coding RNAs
Name microRNA 3660
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of studies provided offers an in‐depth characterization of BRCA2 and its critical role in protecting genome integrity. Detailed structural and biochemical analyses have demonstrated that BRCA2 interacts with key partners such as DSS1 and RAD51 to promote homologous recombination repair of DNA double‐strand breaks, stabilize replication forks, and preserve telomere integrity across multiple cell types and tissues. In addition, BRCA2 dysfunction has been linked with aberrant cytokinesis, impaired gametogenesis, and altered checkpoint signaling in environments ranging from neural development to pancreatic tumorigenesis, as well as playing a significant role in mediating cellular responses to genotoxic stress, including that induced by PARP inhibitors and ionizing radiation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "36"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, while these abstracts collectively elucidate the multifaceted roles of BRCA2 in genomic safeguarding—including its structural basis for DNA binding, engagement with recombination mediators, and involvement in repair pathway fidelity—they make no direct mention of MIR3660. In other words, the literature provided does not describe or assign any explicit function to MIR3660, leaving its role in these pathways either uncharacterized or absent from these reports. One might posit that, if MIR3660 were to have a regulatory influence, it could potentially modulate BRCA2 expression or its interacting networks, but such a connection is not addressed in the studies at hand"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "–."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "36"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, the provided body of work richly documents the essential tumor‐suppressive functions of BRCA2 in homologous recombination, replication fork protection, cytokinetic regulation, and telomere maintenance, all of which are instrumental in the preservation of genomic stability. However, as none of these studies mention MIR3660, no direct functional role for this microRNA can be deduced from the reported findings. Further research will be required to determine whether MIR3660 plays any regulatory or auxiliary role in the BRCA2-associated DNA repair networks or other cellular processes.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "C J Sarkisian, S R Master, L J Huber, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Deletion of BRCA2 exon 27 causes defects in response to both stalled and collapsed replication forks."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mutat Res (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mrfmmm.2014.06.003"}], "href": "https://doi.org/10.1016/j.mrfmmm.2014.06.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25773776"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25773776"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Qinqin Jiang, Manikandan Paramasivam, Bernadette Aressy, et al. 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Synonyms MIR-3660
NCBI Gene ID 100500825
API
Download Associations
Predicted Functions View MIR3660's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR3660's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR3660's ARCHS4 Predicted Functions.

Functional Associations

MIR3660 has 356 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for MIR3660 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR3660 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR3660 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR3660 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3660 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR3660 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR3660 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR3660 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR3660 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR3660 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.