| HGNC Family | Non-coding RNAs |
| Name | microRNA 3688-2 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided reports explicitly mention MIR3688‑2, an integration of their findings allows us to speculate that this microRNA (or regulatory RNA element) may function at the nexus of skeletal muscle metabolic homeostasis and structural remodeling. In one study, augmenting nicotinamide adenine dinucleotide (NAD+) availability was shown to protect muscle from age‐related metabolic decline by engaging cellular NAD+ biosynthetic pathways upon supplementation with NAD+ precursors (nicotinamide mononucleotide and nicotinamide riboside)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther investigations have identified muscle‐specific proteins—such as the short isoform of Nmrk2, also known as muscle integrin binding protein (MIBP) or NRK‑2—that mediate integrin‐dependent cell adhesion and differentiation. These proteins interact selectively with the alpha7β1 integrin complex to modulate extracellular matrix deposition, myogenic differentiation, and key intracellular signaling cascades (for instance, via paxillin), thereby exerting critical effects on muscle structure and function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurthermore, studies exploring the cardiac response to stress reveal that pathways involving NRK‑2/Nmrk2 are central not only to maintaining myocardial NAD+ levels but also to orchestrating adaptive responses to ischemic injury. These pathways help suppress excessive stress kinase activation, preserve extracellular matrix integrity via proper laminin deposition, and sustain mitochondrial as well as overall metabolic function in the heart."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " \n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nTaken together, while MIR3688‑2 is not directly featured in these abstracts, its inferred involvement—as a regulatory molecule intersecting with the NAD+ biosynthetic and integrin‐mediated signaling networks—suggests that it could play a pivotal role in coordinating muscle metabolic adaptation and structural remodeling during stress, aging, and injury. \n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ji Li, Hongwei Rao, Dean Burkin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The muscle integrin binding protein (MIBP) interacts with alpha7beta1 integrin and regulates cell adhesion and laminin matrix deposition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0012-1606(03)00304-x"}], "href": "https://doi.org/10.1016/s0012-1606(03"}, {"type": "t", "text": "00304-x) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12941630"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12941630"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rachel S Fletcher, Joanna Ratajczak, Craig L Doig, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nicotinamide riboside kinases display redundancy in mediating nicotinamide mononucleotide and nicotinamide riboside metabolism in skeletal muscle cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Metab (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molmet.2017.05.011"}], "href": "https://doi.org/10.1016/j.molmet.2017.05.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28752046"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28752046"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Firdos Ahmad, Dhanendra Tomar, Smriti Aryal A C, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nicotinamide riboside kinase-2 alleviates ischemia-induced heart failure through P38 signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Mol Basis Dis (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbadis.2019.165609"}], "href": "https://doi.org/10.1016/j.bbadis.2019.165609"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31743747"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31743747"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Craig L Doig, Agnieszka E Zielinska, Rachel S Fletcher, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Induction of the nicotinamide riboside kinase NAD"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " salvage pathway in a model of sarcoplasmic reticulum dysfunction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Skelet Muscle (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13395-019-0216-z"}], "href": "https://doi.org/10.1186/s13395-019-0216-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32075690"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32075690"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Cynthia Tannous, Robin Deloux, Ahmed Karoui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NMRK2 Gene Is Upregulated in Dilated Cardiomyopathy and Required for Cardiac Function and NAD Levels during Aging."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms22073534"}], "href": "https://doi.org/10.3390/ijms22073534"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33805532"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33805532"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Hezlin Marzook, Anamika Gupta, Dhanendra Tomar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nicotinamide riboside kinase-2 regulates metabolic adaptation in the ischemic heart."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Med (Berl) (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00109-023-02296-6"}], "href": "https://doi.org/10.1007/s00109-023-02296-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36808555"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36808555"}]}]}]}
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| Synonyms | MIR-3688-2 |
| NCBI Gene ID | 100616303 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR3688-2 has 258 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for MIR3688-2 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3688-2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3688-2 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3688-2 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3688-2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR3688-2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3688-2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3688-2 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |